Propagation of Crp regulog to Yersinia pestis FV-1
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia pestis FV-1 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 140 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -168
Score: 4 Sequence: ACATGTGCGACAGATCACATTC
Locus tag: YpesF_010100001565
|
||||
| YpesF_010100001565 | -168 | 4 | ACATGTGCGACAGATCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacZ | ||||
| Ortholog function: beta-D-galactosidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0344 | -110 | 4.7 | TAATGTGAGTTAGCTCACTCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02825 | -110 | 4.4 | TTGTGTGAGTCAGTTCACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_pKPN3p05871 | -109 | 4.6 | TAATGTGAGTCAGCTCACTCAT |
| Enterobacter sp. 638 | Ent638_0928 | -100 | 4.4 | TTTTGTGATCGACTTCGCTTTG |
| Erwinia amylovora ATCC 49946 | EAM_0926 | -94 | 3.8 | TGTTGCGATAGCCATCACATCC |
| Yersinia pestis KIM | y1817 | -168 | 4 | ACATGTGCGACAGATCACATTC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1490 | -149 | 4.1 | CTTTGTGATCGCTTCCACTTTA |
| -92 | 4.5 | ATATGTTATGGAAAACACAAAT | ||
|
Position: -269
Score: 5.2 Sequence: AAAAGTGATTTAGATCACACAT
Locus tag: YpesF_010100002705
|
||||
| YpesF_010100002705 | -269 | 5.2 | AAAAGTGATTTAGATCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3242 | -167 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Salmonella typhimurium LT2 | STM3366 | -166 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04650 | -168 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03651 | -116 | 5.2 | AAAAGTGATTTAGATCACACAT |
| -63 | 3.7 | TATTGTTAGCTACATAATAAAC | ||
| Enterobacter sp. 638 | Ent638_3679 | -165 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Yersinia pestis KIM | y0179 | -269 | 5.2 | AAAAGTGATTTAGATCACACAT |
| Serratia proteamaculans 568 | Spro_4392 | -293 | 5.1 | AAAAGTGATTTAGATCACAGAT |
| -89 | 3.8 | ATTTGTGGTGCGTGTCAGCTAA | ||
|
Position: -55
Score: 5.1 Sequence: ATGTGTGATCTAAATCACTTTT
Locus tag: YpesF_010100002715
|
||||
| YpesF_010100002715 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aaeR | ||||
| Ortholog function: LysR-family transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3243 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Salmonella typhimurium LT2 | STM3367 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04651 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03652 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Enterobacter sp. 638 | Ent638_3680 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_3128 | -37 | 5.3 | AAATGTGATCTAAATCACTTTT |
| Yersinia pestis KIM | y0180 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Serratia proteamaculans 568 | Spro_4393 | -37 | 4.9 | ATCTGTGATCTAAATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0276 | -37 | 5.1 | TAGTGTGATCTAAATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3129 | -131 | 4.5 | ATCTGTGACGCAAATCACTTTT |
|
Position: -276
Score: 4.9 Sequence: ATATGTGATTTGGTGCGCAAAT
Locus tag: YpesF_010100003140
|
||||
| YpesF_010100003140 | -276 | 4.9 | ATATGTGATTTGGTGCGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutU | ||||
| Ortholog function: urocanate hydratase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02357 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00795 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1263 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1253 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4038 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0805 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3193 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -146
Score: 4.8 Sequence: TTATGTGCAGCAAATCACATAA
Locus tag: YpesF_010100003540
|
||||
| YpesF_010100003540 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -92
Score: 3.7 Sequence: GATTGTGATAAATCACTCACTA
Locus tag: YpesF_010100003700
|
||||
| YpesF_010100003700 | -92 | 3.7 | GATTGTGATAAATCACTCACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: maeB | ||||
| Ortholog function: malic enzyme | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2463 | -257 | 3.9 | ATGAGTGCGTTAATTCACACTT |
| Salmonella typhimurium LT2 | STM2472 | -240 | 3.8 | ATGAGTGTGTTGATTCACACTT |
| Enterobacter sp. 638 | Ent638_2958 | -231 | 4.1 | ATACATGACGTACTTAACAAAA |
| Yersinia pestis KIM | y1449 | -92 | 3.7 | GATTGTGATAAATCACTCACTA |
| Serratia proteamaculans 568 | Spro_3472 | -209 | 3.6 | CTTTGTTATCAAACTCACTATC |
| -90 | 4.1 | GTTTGTGACGTTTCTCTCACTA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2719 | -74 | 4 | TGTTATGATTTGACACACAGTA |
|
Position: -97
Score: 4.3 Sequence: TAATGCGCGCCGAATCACATTT
Locus tag: YpesF_010100003875
|
||||
| YpesF_010100003875 | -97 | 4.3 | TAATGCGCGCCGAATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiT | ||||
| Ortholog function: ABC transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0820 | -124 | 4.4 | AGATGTGTACGAAATCACATTT |
| Salmonella typhimurium LT2 | STM0838 | -124 | 4 | AGATGTGTACGAAATCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02298 | -148 | 4.4 | AGATGTGTACGAAATCACATTT |
| Enterobacter sp. 638 | Ent638_1311 | -125 | 4.4 | AGATGTGTACGAAATCACATTT |
| Yersinia pestis KIM | y2677 | -295 | 3.9 | TATCGTTATACCCGTCATACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3010 | -41 | 4 | TAATGCGCGCCAAATCACATTC |
| Edwardsiella tarda EIB202 | ETAE_2518 | -40 | 4.8 | TAATGTGAACAAAATCACGTTA |
|
Position: -147
Score: 4.1 Sequence: TATCATGATACCGGTAACAAAT
Position: -123
Score: 4.6 Sequence: AGATGTGACTTTTATCACAACA
Locus tag: YpesF_010100004035
|
||||
| YpesF_010100004035 | -147 | 4.1 | TATCATGATACCGGTAACAAAT | |
| -123 | 4.6 | AGATGTGACTTTTATCACAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntT | ||||
| Ortholog function: gluconate transporter | ||||
| Yersinia pestis KIM | y3875 | -217 | 4 | TATGTTGATCTCTATCTCAGAA |
| -147 | 4.1 | TATCATGATACCGGTAACAAAT | ||
| -123 | 4.6 | AGATGTGACTTTTATCACAACA | ||
| Serratia proteamaculans 568 | Spro_4651 | -243 | 4.2 | AAGTTTGATCTCTATCCCAGAA |
| -173 | 3.8 | TATCATGATACCGGTAACAATG | ||
| -147 | 3.7 | TGCGGTGATATTGATCGCGATA | ||
|
Position: -123
Score: 3.7 Sequence: TTATTTTATACAAAACATATAT
Locus tag: YpesF_010100004645
|
||||
| YpesF_010100004645 | -123 | 3.7 | TTATTTTATACAAAACATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yafK | ||||
| Ortholog function: hypothetical protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00238 | -208 | 3.7 | AAATGCGAGCTATTGCGCAAAG |
| Yersinia pestis KIM | y0949 | -217 | 3.7 | TTATTTTATACAAAACATATAT |
| Serratia proteamaculans 568 | Spro_0952 | -136 | 4.2 | TTTTTTTATACACAACACATAT |
| Proteus mirabilis HI4320 | PMI0351 | -297 | 3.7 | AATTGTTACTATTTTCTCTTAT |
| -228 | 3.7 | TCGAGTGATTTAGCTCAAGCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1195 | -232 | 3.9 | TCAAGTGATTTAGTTCAAGCAA |
|
Position: -314
Score: 3.3 Sequence: ATAGCTGAAATCATTCAAAAAA
Position: -159
Score: 3.8 Sequence: TTATGTTATAGGATTTACCCTA
Position: -75
Score: 4.2 Sequence: TCATGAGATTTTAGTCACATTA
Locus tag: YpesF_010100005042
|
||||
| YpesF_010100005042 | -314 | 3.3 | ATAGCTGAAATCATTCAAAAAA | |
| -159 | 3.8 | TTATGTTATAGGATTTACCCTA | ||
| -75 | 4.2 | TCATGAGATTTTAGTCACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgS | ||||
| Ortholog function: glycogen synthesis protein GlgS | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3049 | -225 | 3.4 | AATAGTTTCCTTGCTTACATTT |
| -203 | 3.4 | ATCTGTGTTAATAATAACACAG | ||
| -124 | 3.8 | AAGTGTGATCGGGGACAATATA | ||
| Salmonella typhimurium LT2 | STM3197 | -222 | 3.3 | TCGCGTGATAATTTTCATGCTT |
| -178 | 4.2 | TCATGTGACCCATATCTCCTTA | ||
| -117 | 4.2 | TATTGTGATTTTGCGCATTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04437 | -118 | 3.4 | AAGTGTGATGTCAGGCAACTGA |
|
Position: -262
Score: 5 Sequence: ATTCGTGATCTTGATAACAATT
Locus tag: YpesF_010100005894
|
||||
| YpesF_010100005894 | -262 | 5 | ATTCGTGATCTTGATAACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaR | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Yersinia pestis KIM | y2548 | -253 | 5 | ATTCGTGATCTTGATAACAATT |
| Serratia proteamaculans 568 | Spro_0624 | -224 | 5.2 | ATTTGTGATCGTGATAACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0991 | -285 | 3.9 | AATTTTAATTGTGATCTCAGTA |
| -279 | 5 | AATTGTGATCTCAGTAACAATA | ||
|
Position: -143
Score: 4.8 Sequence: AATTGTTATCAAGATCACGAAT
Locus tag: YpesF_010100005899
|
||||
| YpesF_010100005899 | -143 | 4.8 | AATTGTTATCAAGATCACGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaG | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04789 | -125 | 4.4 | TTGTGTTAATCCGATCACAAAA |
| Serratia proteamaculans 568 | Spro_0625 | -123 | 5 | TTTTGTTATCACGATCACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0990 | -159 | 3.7 | AATAATGATAAAAAACAAATTT |
| -129 | 4.9 | TATTGTTACTGAGATCACAATT | ||
|
Position: -129
Score: 3.8 Sequence: AGTTGTGCTATCTATCGCACCA
Locus tag: YpesF_010100006499
|
||||
| YpesF_010100006499 | -129 | 3.8 | AGTTGTGCTATCTATCGCACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: hypothetical protein | ||||
| Enterobacter sp. 638 | Ent638_2642 | -116 | 4 | CAGTGTGACATAGATCAGCAAA |
| Yersinia pestis KIM | y2629 | -78 | 3.8 | AGTTGTGCTATCTATCGCACCA |
| -76 | 3.6 | TTGTGCTATCTATCGCACCAAT | ||
| Serratia proteamaculans 568 | Spro_1608 | -297 | 3.7 | ATGCTTGAAGTGGCTCTCACTT |
| -72 | 4.2 | ACATGTGTGCCACATCACAAAA | ||
| Proteus mirabilis HI4320 | PMI0655 | -71 | 4.7 | CTATGTGATCAGGTTAACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1560 | -74 | 4.4 | ACATGTGATCACATTAACAAAT |
|
Position: -172
Score: 3.6 Sequence: TGATTTGATTTAATACAAATCA
Position: 20
Score: 3.5 Sequence: TAATGTGCTGGTATTTGCAACA
Locus tag: YpesF_010100007134
|
||||
| YpesF_010100007134 | -172 | 3.6 | TGATTTGATTTAATACAAATCA | |
| 20 | 3.5 | TAATGTGCTGGTATTTGCAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tcyP | ||||
| Ortholog function: L-cystine uptake protein TcyP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1729 | -90 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Salmonella typhimurium LT2 | STM1320 | -91 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01755 | -90 | 3.7 | ATATAAGAGGTCGGTCACAGTT |
| Yersinia pestis KIM | y1878 | -166 | 3.6 | TGATTTGATTTAATACAAATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2410 | -176 | 3.7 | TGACGTTATCTGCTGCACCCAT |
|
Position: -103
Score: 4.3 Sequence: TATTTTGATAAGAATAACGTTA
Locus tag: YpesF_010100007514
|
||||
| YpesF_010100007514 | -103 | 4.3 | TATTTTGATAAGAATAACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsaB | ||||
| Ortholog function: fructose 6-phosphate aldolase 2 | ||||
| Yersinia pestis KIM | y2074 | -103 | 4.3 | TATTTTGATAAGAATAACGTTA |
| Serratia proteamaculans 568 | Spro_2640 | -88 | 4.7 | TGATTTGATTTCGATCAAATAT |
|
Position: -244
Score: 4.5 Sequence: TTTTGCGATAACCATCACATTG
Locus tag: YpesF_010100007999
|
||||
| YpesF_010100007999 | -244 | 4.5 | TTTTGCGATAACCATCACATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chbB | ||||
| Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component | ||||
| Yersinia pestis KIM | y1251 | -214 | 4.5 | TTTTGCGATAACCATCACATTG |
| Serratia proteamaculans 568 | Spro_0834 | -177 | 4.6 | ATTTGCGAGACAGATCACACTA |
| -143 | 3.6 | AAATGTGAAGAGGGTCAATCAG | ||
|
Position: -43
Score: 3.7 Sequence: TTTATTGACATAAATAAAAATA
Locus tag: YpesF_010100008264
|
||||
| YpesF_010100008264 | -43 | 3.7 | TTTATTGACATAAATAAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -296
Score: 4.8 Sequence: AATCGTGACATAAGTCACACTT
Position: -223
Score: 4.6 Sequence: AGATGTGATCTTAATCAACAAA
Locus tag: YpesF_010100008479
|
||||
| YpesF_010100008479 | -296 | 4.8 | AATCGTGACATAAGTCACACTT | |
| -223 | 4.6 | AGATGTGATCTTAATCAACAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3599 | -206 | 4.5 | TTTTGTGATGAACGTCACGTCA |
| -162 | 5.4 | TTATGTGATTGATATCACACAA | ||
| -113 | 3.3 | TTCAGTGCCAGATTTCGCAGTA | ||
| Salmonella typhimurium LT2 | STM3685 | -207 | 4.8 | CTTTGTGATCAATATCACATCA |
| -163 | 5.4 | TTATGTGACGCAAATCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05054 | -203 | 5.2 | TTTTGTGATCAATATCACATCA |
| -159 | 5 | TCATGTGATCCAAATCACACAA | ||
| -110 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03942 | -208 | 4.9 | TTTTGTGATCATCATCACTAAA |
| -164 | 5.2 | TCATGTGATCCAAATCACATAA | ||
| -115 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Enterobacter sp. 638 | Ent638_0136 | -224 | 3.4 | TATTTTTTTCATACTCTCATTT |
| -205 | 4.8 | TTTTGTGATGGCGATCACCTCA | ||
| -161 | 5.1 | TTGCGTGATGCAGATCACACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3416 | -229 | 3.3 | CATTGCGAATATCTTTACACTT |
| -210 | 3.9 | CTTCGTGACTCATGTCACTAAA | ||
| -166 | 4.8 | TTAAGTGACCCGCATCACACTT | ||
| -95 | 3.2 | CGTTTTGATCGTGATCCCTCAA | ||
| -34 | 3.5 | ACATGAGATTTGCATCATTAAT | ||
| Yersinia pestis KIM | y4087 | -223 | 4.6 | AGATGTGATCTTAATCAACAAA |
| -179 | 4.5 | TTGTGTGACTTTCGTCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0072 | -195 | 5.2 | AAATGTGATGTATATCACTATA |
| -151 | 4.5 | GTTGGTGATCTGCATCACAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0087 | -230 | 5.1 | TTTTGTGAAGTAAATCACCTAT |
| -186 | 4.5 | TTGTGTGATTTTTGTCACGTTG | ||
|
Position: -245
Score: 3.7 Sequence: TATTTTGATAATGAATACATAC
Position: -215
Score: 3.8 Sequence: TTGTATGATTTTTACTACATAT
Locus tag: YpesF_010100008489
|
||||
| YpesF_010100008489 | -245 | 3.7 | TATTTTGATAATGAATACATAC | |
| -215 | 3.8 | TTGTATGATTTTTACTACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ushA | ||||
| Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0480 | -174 | 4 | ATTTGTGATTATTACCAGACTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00461 | -125 | 3.9 | AATTATTATCCAACTAACATAC |
| -94 | 3.7 | AGGTTTGAAGGAAGTCGCAATT | ||
| Enterobacter sp. 638 | Ent638_0959 | -95 | 3.9 | AGATTTGAGGAAAGTCGCAATT |
| Serratia proteamaculans 568 | Spro_1147 | -103 | 4.6 | TAATTTGACGCACATCGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_1034 | -139 | 4.4 | TTAGGTGAGTCACGTCACAATA |
| Proteus mirabilis HI4320 | PMI2177 | -111 | 3.7 | ATATATAACCTACGTCATAAAA |
|
Position: -268
Score: 3.8 Sequence: TGGTGCGATTCGTGTCTCAAAA
Locus tag: YpesF_010100008634
|
||||
| YpesF_010100008634 | -268 | 3.8 | TGGTGCGATTCGTGTCTCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnH2 | ||||
| Ortholog function: glutamate and aspartate transporter subunit | ||||
| Yersinia pestis KIM | y1189 | -268 | 3.8 | TGGTGCGATTCGTGTCTCAAAA |
| Proteus mirabilis HI4320 | PMI0437 | -142 | 4 | TATTGAGAGATAGCTCTCGTAT |
|
Position: -82
Score: 3.9 Sequence: ATTTGTGATAACAGTCATCTCA
Locus tag: YpesF_010100009159
|
||||
| YpesF_010100009159 | -82 | 3.9 | ATTTGTGATAACAGTCATCTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbK | ||||
| Ortholog function: hypothetical protein | ||||
| Yersinia pestis KIM | y2952 | -73 | 3.9 | ATTTGTGATAACAGTCATCTCA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2508 | -147 | 3.8 | ATAAATAATATAAATCAAATAA |
| -90 | 3.7 | GAATGTGATAACCATCGTGTAT | ||
|
Position: -151
Score: 3.6 Sequence: ATTAGTGATCATTGTCAAAACC
Position: -48
Score: 3.6 Sequence: TTGAGTGTTTGCTTACACATTA
Locus tag: YpesF_010100009219
|
||||
| YpesF_010100009219 | -151 | 3.6 | ATTAGTGATCATTGTCAAAACC | |
| -48 | 3.6 | TTGAGTGTTTGCTTACACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspA3 | ||||
| Ortholog function: Universal stress protein A | ||||
| Enterobacter sp. 638 | Ent638_3909 | -195 | 3.8 | AAAGTCGATCGGGTTCACGTTT |
| Yersinia pestis KIM | y3859 | -151 | 3.6 | ATTAGTGATCATTGTCAAAACC |
| Serratia proteamaculans 568 | Spro_4691 | -123 | 4 | CAGTGTGATCGCCTCAACATAT |
| Proteus mirabilis HI4320 | PMI3009 | -290 | 3.6 | AGTTGTTCGCTTTTTCAAAAAA |
| -113 | 3.8 | AGTTGTGATCAAGGCAACATCT | ||
|
Position: -197
Score: 3.4 Sequence: CGATGCGCTGCCCATAACAAAA
Locus tag: YpesF_010100009644
|
||||
| YpesF_010100009644 | -197 | 3.4 | CGATGCGCTGCCCATAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ugpA | ||||
| Ortholog function: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3452 | -182 | 3.6 | ATCCGTGCCCCATCTCCCATTT |
| Salmonella typhimurium LT2 | STM3556 | -184 | 3.5 | ATCCGTGCCGTAGCTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04873 | -185 | 3.3 | TATTTTTCTGTCATTCGCGCAT |
| -162 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03812 | -88 | 3.4 | TATTTTTCTGTAATTCGAACAT |
| Enterobacter sp. 638 | Ent638_3855 | -162 | 3.5 | AGTTATTATTCCCGCCACATTA |
| -58 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3284 | -171 | 3.9 | GTGTGTGATGCCGTTAACACAG |
| Yersinia pestis KIM | y0435 | -197 | 3.4 | CGATGCGCTGCCCATAACAAAA |
| Edwardsiella tarda EIB202 | ETAE_3320 | -63 | 3.4 | CAATATGTTGTTTATCACTCAA |
|
Position: -72
Score: 3.5 Sequence: AAAACTGATTTATTTCGCTCAT
Position: -41
Score: 4.1 Sequence: TTTTTTGATGTGAGCCACACAG
Locus tag: YpesF_010100009649
|
||||
| YpesF_010100009649 | -72 | 3.5 | AAAACTGATTTATTTCGCTCAT | |
| -41 | 4.1 | TTTTTTGATGTGAGCCACACAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ugpB | ||||
| Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3453 | -182 | 3.6 | ATCCGTGCCCCATCTCCCATTT |
| Salmonella typhimurium LT2 | STM3557 | -184 | 3.5 | ATCCGTGCCGTAGCTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04874 | -185 | 3.3 | TATTTTTCTGTCATTCGCGCAT |
| -162 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03813 | -88 | 3.4 | TATTTTTCTGTAATTCGAACAT |
| Enterobacter sp. 638 | Ent638_3856 | -162 | 3.5 | AGTTATTATTCCCGCCACATTA |
| -58 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3285 | -171 | 3.9 | GTGTGTGATGCCGTTAACACAG |
| Yersinia pestis KIM | y0434 | -72 | 3.5 | AAAACTGATTTATTTCGCTCAT |
| -41 | 4.1 | TTTTTTGATGTGAGCCACACAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2429 | -145 | 3.5 | TATCGCGATACAGTTCATCACT |
| Edwardsiella tarda EIB202 | ETAE_3321 | -63 | 3.4 | CAATATGTTGTTTATCACTCAA |
|
Position: -277
Score: 4.5 Sequence: AAATGAGATATTTCTCGCAAAA
Locus tag: YpesF_010100010074
|
||||
| YpesF_010100010074 | -277 | 4.5 | AAATGAGATATTTCTCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppiA | ||||
| Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8) | ||||
| Yersinia pestis KIM | y3951 | -247 | 4.5 | AAATGAGATATTTCTCGCAAAA |
| -81 | 3.6 | AAATGTGCATTCTGTTACGTAA | ||
| Serratia proteamaculans 568 | Spro_4589 | -181 | 3.9 | ATGCGTGATGCAGTTGGCAAAA |
|
Position: -4
Score: 3.4 Sequence: AAAAATGAGCAAAATAAAAATT
Locus tag: YpesF_010100010114
|
||||
| YpesF_010100010114 | -4 | 3.4 | AAAAATGAGCAAAATAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: nitrite reductase (NAD(P)H) subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -124 | 3.2 | AAAATTTATACAAATCAGCAAT |
| -76 | 3.4 | GAATTTGATTTACATCAATAAG | ||
| Salmonella typhimurium LT2 | STM3474 | -76 | 3.4 | GAATTTGATTTACATCAATAAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -76 | 3.4 | GAATTTGATTTACATCAATAAG |
| Enterobacter sp. 638 | Ent638_3793 | -76 | 3.3 | GTATTTGATTTGCATCAATAAG |
| Yersinia pestis KIM | y3945 | -75 | 3.7 | CAAATTGATTTACATCAAGAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -186 | 4.2 | AAGCGTGCTATAGATCTCACTT |
| Proteus mirabilis HI4320 | PMI1479 | -129 | 3.5 | TTTTGTGCACTTTATTAACAAT |
|
Position: -97
Score: 4.2 Sequence: ATACGTGATCTGCCGCCCAAAA
Locus tag: YpesF_010100010254
|
||||
| YpesF_010100010254 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4069 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Salmonella typhimurium LT2 | STM4275 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03816 | -101 | 4.3 | TTGCGTGATCTGCCGCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04478 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT |
| Enterobacter sp. 638 | Ent638_0276 | -101 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Yersinia pestis KIM | y0510 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA |
| Serratia proteamaculans 568 | Spro_0297 | -97 | 4 | TTGCGTGATCTGCCGCCCAAAA |
| Proteus mirabilis HI4320 | PMI3037 | -97 | 4.5 | TTTCGTGATCTTATGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0074 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA |
|
Position: -324
Score: 4.1 Sequence: TTTTATGATAACGATCATGTTT
Position: -220
Score: 4.6 Sequence: TTATGAGATCTACACCACAATT
Locus tag: YpesF_010100010549
|
||||
| YpesF_010100010549 | -324 | 4.1 | TTTTATGATAACGATCATGTTT | |
| -220 | 4.6 | TTATGAGATCTACACCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylA | ||||
| Ortholog function: Xylose isomerase (EC 5.3.1.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3565 | -224 | 3.9 | ATTTATGACCGAGATCTTACTT |
| -134 | 4.2 | TTTTGCGAGCGAGCGCACACTT | ||
| Salmonella typhimurium LT2 | STM3661 | -260 | 3.9 | TTATGCGAAATTCATCACAGCA |
| -133 | 4.4 | TTTTGAGAGCCAGAGCACATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05021 | -214 | 4.1 | AATTATGACCGAGATCGTACTT |
| -122 | 4.2 | TTTTGCGAGGCGGCGCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03929 | -234 | 4.1 | TTTTGCGAGCTGGCGCACGTTT |
| Enterobacter sp. 638 | Ent638_0156 | -231 | 3.8 | ATTTATGACCGTGATCTGATTT |
| -135 | 3.9 | TTTTGGGAGCCAGCGCACGTTT | ||
| Yersinia pestis KIM | y4057 | -220 | 4.6 | TTATGAGATCTACACCACAATT |
| Serratia proteamaculans 568 | Spro_0098 | -222 | 3.9 | TTTTATGATGGCGGTCATGCTT |
| -129 | 4.6 | TTATGAGATCTGTCGCACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0097 | -223 | 4.7 | TTTTTTGATGCGGGTCATATTT |
| -135 | 4.4 | TTTTGCGACACAGCGCACATTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2275 | -251 | 4.6 | ATTTATGAGATAAATCACACAA |
|
Position: -264
Score: 4.8 Sequence: AATTGTGGTGTAGATCTCATAA
Position: -160
Score: 4.2 Sequence: AAACATGATCGTTATCATAAAA
Locus tag: YpesF_010100010554
|
||||
| YpesF_010100010554 | -264 | 4.8 | AATTGTGGTGTAGATCTCATAA | |
| -160 | 4.2 | AAACATGATCGTTATCATAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylF | ||||
| Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3566 | -253 | 4.2 | AAGTGTGCGCTCGCTCGCAAAA |
| -163 | 3.7 | AAGTAAGATCTCGGTCATAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05022 | -254 | 4.1 | AAGTGTGCGCCGCCTCGCAAAA |
| -162 | 3.8 | AAGTACGATCTCGGTCATAATT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03930 | -234 | 3.8 | AAATACGATCGCCGTCATAATT |
| Enterobacter sp. 638 | Ent638_0155 | -264 | 3.9 | AAACGTGCGCTGGCTCCCAAAA |
| Yersinia pestis KIM | y4056 | -264 | 4.8 | AATTGTGGTGTAGATCTCATAA |
| -160 | 4.2 | AAACATGATCGTTATCATAAAA | ||
| Serratia proteamaculans 568 | Spro_0099 | -259 | 4.4 | AAATGTGCGACAGATCTCATAA |
| -166 | 3.7 | AAGCATGACCGCCATCATAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0098 | -272 | 4.5 | AAATATGACCCGCATCAAAAAA |
|
Position: -299
Score: 5.4 Sequence: TAATGTGACTTTGTTCACATTA
Position: -122
Score: 3.8 Sequence: TTCTTTGAAAGAATTCTCATAA
Position: -21
Score: 4.9 Sequence: TAATTTGAGGGAGATCACAAAA
Locus tag: YpesF_010100010629
|
||||
| YpesF_010100010629 | -299 | 5.4 | TAATGTGACTTTGTTCACATTA | |
| -122 | 3.8 | TTCTTTGAAAGAATTCTCATAA | ||
| -21 | 4.9 | TAATTTGAGGGAGATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_02295 | ||||
| Ortholog function: hypothetical protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02295 | -218 | 3.9 | TTTTGTTATCTCATTGAAAATT |
| -104 | 4.1 | TTTTGTGCAAGTTTTCTCATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02295 | -218 | 3.9 | TTTTGTTATCTCATTGAAAATT |
| -104 | 4.1 | TTTTGTGCAAGTTTTCTCATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00854 | -103 | 3.9 | TGAAATGAGCGAGATCGCATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00854 | -103 | 3.9 | TGAAATGAGCGAGATCGCATAT |
| Enterobacter sp. 638 | Ent638_1314 | -122 | 4.1 | TTTTGTGCAAGCTTTCTCATAA |
| Enterobacter sp. 638 | Ent638_1314 | -122 | 4.1 | TTTTGTGCAAGCTTTCTCATAA |
| Yersinia pestis KIM | y3231 | -299 | 5.4 | TAATGTGACTTTGTTCACATTA |
| -122 | 3.8 | TTCTTTGAAAGAATTCTCATAA | ||
| -21 | 4.9 | TAATTTGAGGGAGATCACAAAA | ||
| Yersinia pestis KIM | y3231 | -299 | 5.4 | TAATGTGACTTTGTTCACATTA |
| -122 | 3.8 | TTCTTTGAAAGAATTCTCATAA | ||
| -21 | 4.9 | TAATTTGAGGGAGATCACAAAA | ||
| Serratia proteamaculans 568 | Spro_3600 | -130 | 3.7 | AAACGTGGTTTTTTGCAAAAAT |
| -21 | 4.6 | AAATTTGAAGGAGATCACAGAA | ||
| Serratia proteamaculans 568 | Spro_3600 | -130 | 3.7 | AAACGTGGTTTTTTGCAAAAAT |
| -21 | 4.6 | AAATTTGAAGGAGATCACAGAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1966 | -21 | 4.8 | AAAAGTGAACGGGATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1966 | -21 | 4.8 | AAAAGTGAACGGGATCACAAAA |
|
Position: -339
Score: 4.6 Sequence: ATTTGTGATCTTCAATACAAAA
Locus tag: YpesF_010100010739
|
||||
| YpesF_010100010739 | -339 | 4.6 | ATTTGTGATCTTCAATACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treB | ||||
| Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4240 | -101 | 3.8 | AATTGTGATCTTCGCTGCGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03571 | -156 | 3.8 | ATTTGTGATCTTCGCTGCGTTT |
| Enterobacter sp. 638 | Ent638_0439 | -106 | 4 | TATTGTGATCTTCACCCGATTT |
| Serratia proteamaculans 568 | Spro_0529 | -124 | 3.8 | TTTTGTGATCCTCGCCCCAAAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3288 | -127 | 4.3 | CAATGTGATCTTCAACCCATTT |
|
Position: -260
Score: 4.2 Sequence: TATTGTGCCTAACACCACAAAA
Locus tag: YpesF_010100010809
|
||||
| YpesF_010100010809 | -260 | 4.2 | TATTGTGCCTAACACCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malE | ||||
| Ortholog function: maltose ABC transporter periplasmic protein | ||||
| Yersinia pestis KIM | y0028 | -286 | 4.2 | TATTGTGCCTAACACCACAAAA |
| -257 | 4 | CAGTGTTAACTGAGTCACAATA | ||
| Serratia proteamaculans 568 | Spro_4472 | -199 | 4 | ATCTGTGATCTGCCTGGCAAAA |
| -165 | 3.6 | TTTTGTGTCTGACGCCACAGAA | ||
| -136 | 4.4 | CAATGTTAACTGGATCACACTA | ||
|
Position: -180
Score: 3.6 Sequence: TAGCGTGCTAATTATAGCATAA
Locus tag: YpesF_010100011444
|
||||
| YpesF_010100011444 | -180 | 3.6 | TAGCGTGCTAATTATAGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tesB | ||||
| Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0452 | -138 | 3.9 | AAGTGTGGCACACATCACGCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02706 | -135 | 3.9 | AAGTGTGGCATATCTCACTTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00415 | -139 | 3.8 | AAGTGTGGCACAGATCTCAGAT |
| Enterobacter sp. 638 | Ent638_0920 | -131 | 4 | AAGTGTGGCACATATCACTTAT |
| Yersinia pestis KIM | y1043 | -153 | 3.6 | TAGCGTGCTAATTATAGCATAA |
| Serratia proteamaculans 568 | Spro_1111 | -54 | 3.6 | TGCCGTGATATTCCGCACACTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1162 | -154 | 3.7 | TAGTATGATTCAATAAACACAA |
|
Position: -152
Score: 3.8 Sequence: AAAGTTGATATATATCAATTTT
Locus tag: YpesF_010100011609
|
||||
| YpesF_010100011609 | -152 | 3.8 | AAAGTTGATATATATCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -154 | 3.9 | AAACTTGATTAACATCAATTTT |
| Salmonella typhimurium LT2 | STM1211 | -154 | 4.1 | AAACTTGATGCACATCAATTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -152 | 4.1 | AAACTTGATGCACATCAATTTT |
| Enterobacter sp. 638 | Ent638_1624 | -153 | 4 | AAACTTGATTCATATCAATTTT |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -55 | 3.7 | TAAGGTTATTTTATTAACCTTT |
| Yersinia pestis KIM | y1777 | -152 | 3.8 | AAAGTTGATATATATCAATTTT |
| Serratia proteamaculans 568 | Spro_1926 | -153 | 4.3 | AAGTTTGATGTACATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -153 | 4 | TAAATTGATATATATCAATTTT |
| Edwardsiella tarda EIB202 | ETAE_2070 | -166 | 4.3 | TTATTTGATTTGAATCAATTTT |
| Proteus mirabilis HI4320 | PMI0875 | -157 | 4.6 | TTTTTTGATATAAATCAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -154 | 3.8 | GAATTTGATGTTGTTCAATTTT |
|
Position: -146
Score: 4.3 Sequence: ACTTTTGACTGACATCACAAAA
Locus tag: YpesF_010100011864
|
||||
| YpesF_010100011864 | -146 | 4.3 | ACTTTTGACTGACATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araB | ||||
| Ortholog function: L-ribulokinase | ||||
| Erwinia amylovora ATCC 49946 | EAM_1697 | -131 | 4.1 | ACATATGAAGGCCATCACATAA |
| Yersinia pestis KIM | y2095 | -146 | 4.3 | ACTTTTGACTGACATCACAAAA |
| Serratia proteamaculans 568 | Spro_2244 | -132 | 3.9 | ACTTATGACAGCCGTCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2274 | -133 | 3.9 | ACCTTTGACCAGCTTCACAAAA |
|
Position: -283
Score: 4.3 Sequence: TTTTGTGATGTCAGTCAAAAGT
Locus tag: YpesF_010100011869
|
||||
| YpesF_010100011869 | -283 | 4.3 | TTTTGTGATGTCAGTCAAAAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araF | ||||
| Ortholog function: L-arabinose-binding periplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1901 | -163 | 4.2 | CGATGTGATATTGCTCTCCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01050 | -164 | 4 | CGGTGTGATGCCGCTCTCCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02396 | -161 | 4 | CGATGTGATAATGCTCTCGTAT |
| -72 | 3.6 | TGTTTTGATGACGATTAAATTG | ||
| Enterobacter sp. 638 | Ent638_2476 | -162 | 3.7 | CGGTGTGATGGCGCTCTCTTAT |
| Erwinia amylovora ATCC 49946 | EAM_1698 | -251 | 4.3 | TTATGTGATGGCCTTCATATGT |
| Yersinia pestis KIM | y2096 | -283 | 4.3 | TTTTGTGATGTCAGTCAAAAGT |
| Serratia proteamaculans 568 | Spro_2245 | -251 | 3.8 | TTTTGTGACGGCTGTCATAAGT |
|
Position: -323
Score: 4.4 Sequence: ATCTGTGAGAAAATTCACAGTT
Locus tag: YpesF_010100011909
|
||||
| YpesF_010100011909 | -323 | 4.4 | ATCTGTGAGAAAATTCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mglB | ||||
| Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2150 | -270 | 4.5 | ATCTGTGAGTGATTTCACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00641 | -270 | 4.7 | ATATGTGAGTAAATTCACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02588 | -239 | 4.8 | ATTTGTGAGTAAATTCACAGTA |
| Enterobacter sp. 638 | Ent638_2750 | -271 | 4.4 | ATCTGTGAGTAAATTCACAGTA |
| Yersinia pestis KIM | y2662 | -212 | 4.4 | ATCTGTGAGAAAATTCACAGTT |
| Serratia proteamaculans 568 | Spro_1563 | -229 | 4.4 | ATCTGTGAGAAAATTCACAGAT |
|
Position: -58
Score: 3.4 Sequence: GGGTGTGACCCGCATCATGCTT
Locus tag: YpesF_010100011924
|
||||
| YpesF_010100011924 | -58 | 3.4 | GGGTGTGACCCGCATCATGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folE | ||||
| Ortholog function: GTP cyclohydrolase I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2153 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2193 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00638 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02591 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2753 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1560 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0639 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: -263
Score: 5.4 Sequence: TTATGTGATGTATTTCACGTTT
Locus tag: YpesF_010100012244
|
||||
| YpesF_010100012244 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -137
Score: 4.1 Sequence: TAAGTTGCTACGGATCACAATT
Locus tag: YpesF_010100012449
|
||||
| YpesF_010100012449 | -137 | 4.1 | TAAGTTGCTACGGATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malP | ||||
| Ortholog function: maltodextrin phosphorylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3417 | -141 | 4.5 | TTAAGTGGTTGAGATCACATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04838 | -139 | 4 | TTAAGTGGCGGCGATCACACTT |
| Serratia proteamaculans 568 | Spro_4636 | -139 | 4.4 | AAAAGTGCCTGAGATCACAATT |
|
Position: -149
Score: 5.4 Sequence: ATGTGTGATTTAAATCACAATT
Locus tag: YpesF_010100012604
|
||||
| YpesF_010100012604 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -81
Score: 3.9 Sequence: AGATGTGATCTCGATTAGATCA
Locus tag: YpesF_010100013579
|
||||
| YpesF_010100013579 | -81 | 3.9 | AGATGTGATCTCGATTAGATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -166 | 4.9 | AAAATTGATTTAAATCACATTA |
| -82 | 3.8 | TAATGTGATCTATGTAGGATCA | ||
| Salmonella typhimurium LT2 | STM1732 | -82 | 4.2 | AAATGTGATCTGTATTAGATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -82 | 3.9 | TAATGTGATCTGTATTGGATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -101 | 3.9 | CATTGCGATCGGTAGCAAAAAT |
| -45 | 4 | TAGTGTGATCTAAAACAGATCA | ||
| Enterobacter sp. 638 | Ent638_2283 | -121 | 3.7 | AAAATTAATCTGGATCAACAAA |
| Yersinia pestis KIM | y2044 | -69 | 3.9 | AGATGTGATCTCGATTAGATCA |
| Serratia proteamaculans 568 | Spro_2674 | -135 | 3.8 | TTTTTTGATTCAGATCAATCCT |
| Edwardsiella tarda EIB202 | ETAE_1528 | -161 | 3.9 | CTGATTGATGTCTATCAAATTT |
| Proteus mirabilis HI4320 | PMI1350 | -168 | 4.6 | AAATTTGATGTGGATCAATTAT |
| -85 | 3.8 | AGTTGTGATCGGCATTAGATCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -164 | 4.3 | AACTTTGATTTGGATCAAGTTA |
| -39 | 3.8 | TATTTTGATTGACTTTAAATCA | ||
|
Position: -254
Score: 4.5 Sequence: AATCGTGATCCTAATCACTGTT
Locus tag: YpesF_010100013864
|
||||
| YpesF_010100013864 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -310
Score: 5.4 Sequence: TAATGTGATCTGGATCTCAATT
Position: -260
Score: 4.6 Sequence: ATTTGTGATAGCGCTATCATTT
Locus tag: YpesF_010100014724
|
||||
| YpesF_010100014724 | -310 | 5.4 | TAATGTGATCTGGATCTCAATT | |
| -260 | 4.6 | ATTTGTGATAGCGCTATCATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_00488 | ||||
| Ortholog function: LacI-family transcriptional regulator | ||||
| Salmonella typhimurium LT2 | STM2345 | -192 | 4 | AGCTGCGATCGTTATCACAAAG |
| -143 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00488 | -192 | 4.6 | ATCTGTGATCATATTCACAAAG |
| -143 | 4.5 | ATATGTGATAGCGCTATCAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01748 | -155 | 4.2 | AACTGTGATACACCTCCCAAAG |
| -53 | 3.6 | AGTTATAATGCGATTCGCAGAT | ||
| Enterobacter sp. 638 | Ent638_2847 | -178 | 4.1 | AGCTGCGATCAAGATCACAAAG |
| -129 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Yersinia pestis KIM | y1619 | -208 | 5.4 | TAATGTGATCTGGATCTCAATT |
| -158 | 4.6 | ATTTGTGATAGCGCTATCATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3772 | -246 | 4.5 | TAATGTGATTAACATCCAAAAA |
| -196 | 4 | AACTGTGACCGGCTTAGCACAA | ||
| Edwardsiella tarda EIB202 | ETAE_3025 | -210 | 4.3 | TTTCGTGATAGCGCTATCATTT |
| Proteus mirabilis HI4320 | PMI1778 | -139 | 4.2 | AATTGTGATAGCGCTATTATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1978 | -195 | 3.8 | GCTAGTGATATTAGTCACAAAT |
| -145 | 4.7 | AATTGTGATAGCGCTATCATTT | ||
|
Position: -151
Score: 5.5 Sequence: TAATGTGATTATGATCACATTT
Locus tag: YpesF_010100014964
|
||||
| YpesF_010100014964 | -151 | 5.5 | TAATGTGATTATGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC2 | ||||
| Ortholog function: Na+ dependent nucleoside transporter | ||||
| Yersinia pestis KIM | y3744 | -154 | 3.8 | CTTTGTCAATAACCTCACATAT |
| -115 | 5.5 | TAATGTGATTATGATCACATTT | ||
| Serratia proteamaculans 568 | Spro_0659 | -181 | 3.9 | AACCGTGACGCATGTCACGTAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0473 | -182 | 4.9 | AATTGTGACGAAGATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_0482 | -232 | 4.9 | TGATGTGATATGCATCACTTTT |
| Proteus mirabilis HI4320 | PMI2418 | -180 | 5.2 | TAGTGTGATTTAGATCTCATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0519 | -178 | 5.5 | TTGTGTGATTCACATCACATTT |
|
Position: -184
Score: 3.7 Sequence: TGCGGTGAGATGGATCTCAATT
Locus tag: YpesF_010100014969
|
||||
| YpesF_010100014969 | -184 | 3.7 | TGCGGTGAGATGGATCTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -323
Score: 3.4 Sequence: AAGTGTGAATTTAAATTCAAAA
Position: -151
Score: 4.2 Sequence: AAATGTGCTGGGTTTCATGATT
Position: -139
Score: 3.3 Sequence: TTTCATGATTTCGGTCAAGGTC
Position: -74
Score: 3.4 Sequence: TTTTGAAATTGGTATTACCAAT
Position: -4
Score: 3.4 Sequence: AAATATGGCCTACAACAAAATA
Locus tag: YpesF_010100014989
|
||||
| YpesF_010100014989 | -323 | 3.4 | AAGTGTGAATTTAAATTCAAAA | |
| -151 | 4.2 | AAATGTGCTGGGTTTCATGATT | ||
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| -4 | 3.4 | AAATATGGCCTACAACAAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -123
Score: 3.8 Sequence: TTACGTTATTGCAATAACCTAA
Locus tag: YpesF_010100015019
|
||||
| YpesF_010100015019 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppdD | ||||
| Ortholog function: predicted major pilin subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0108 | -145 | 3.2 | CTTCGTAACGCCTCGCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03268 | -146 | 3.4 | TTTTTCGAGCGGCCTCGCAAAC |
| Yersinia pestis KIM | y0761 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA |
| Proteus mirabilis HI4320 | PMI2049 | -146 | 4.3 | TAATGCGAACTTGCTCTCAATA |
|
Position: -75
Score: 5 Sequence: TAATGAGATATAAATCACAATT
Locus tag: YpesF_010100015224
|
||||
| YpesF_010100015224 | -75 | 5 | TAATGAGATATAAATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -224
Score: 4.6 Sequence: AAGTGTGAGAGCAATCACAGAT
Locus tag: YpesF_010100015499
|
||||
| YpesF_010100015499 | -224 | 4.6 | AAGTGTGAGAGCAATCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: aspartate ammonia-lyase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4139 | -206 | 4.5 | AGCGGTGATCTATTTCACAAAT |
| -156 | 4.2 | TAAAGTGATCCAGATTACGGTA | ||
| Salmonella typhimurium LT2 | STM4326 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03696 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0326 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Yersinia pestis KIM | y0606 | -224 | 4.6 | AAGTGTGAGAGCAATCACAGAT |
| Serratia proteamaculans 568 | Spro_0406 | -205 | 4.7 | AAACGTGAATGAGATCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_0311 | -197 | 4.4 | ATCTGTGAGTATTATCACAGAT |
| Proteus mirabilis HI4320 | PMI2546 | -206 | 4.1 | ATCCATGAGATAGATCACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -274 | 3.8 | AGATATAATTGGGGTCACAGTT |
| -211 | 5.6 | AATTGTGATAAATATCACATAT | ||
|
Position: -221
Score: 4.8 Sequence: ATCTGTGATTGCTCTCACACTT
Locus tag: YpesF_010100015509
|
||||
| YpesF_010100015509 | -221 | 4.8 | ATCTGTGATTGCTCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fxsA | ||||
| Ortholog function: suppressor of F plamsid exlusion of phage T7 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4140 | -202 | 4.1 | TACCGTAATCTGGATCACTTTA |
| -152 | 4.3 | ATTTGTGAAATAGATCACCGCT | ||
| Salmonella typhimurium LT2 | STM4327 | -203 | 4.1 | TACCGTAATCTGGATCACTTAA |
| -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03695 | -156 | 4.1 | TTTTGTGAAATAGGTCACCGCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04530 | -140 | 3.7 | ATCTGTGAAATGGGTCACCGCT |
| Enterobacter sp. 638 | Ent638_0327 | -151 | 3.8 | ATCTGTGAAATGAATCACCGCT |
| Erwinia amylovora ATCC 49946 | EAM_0417 | -161 | 3.9 | ATATCTGTTCCAGGTCACATTG |
| Yersinia pestis KIM | y0607 | -245 | 4.8 | ATCTGTGATTGCTCTCACACTT |
| Serratia proteamaculans 568 | Spro_0407 | -117 | 4.9 | TTCTGTGATCTCATTCACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0623 | -245 | 3.7 | AACTGTGATTGTAGTCACGAGT |
| -185 | 3.6 | AAATGTGCAAAGGCGCACCCAT | ||
| Edwardsiella tarda EIB202 | ETAE_0312 | -189 | 4.6 | ATCTGTGATAATACTCACAGAT |
| Proteus mirabilis HI4320 | PMI2545 | -188 | 4.7 | TTTTGTGATCTATCTCATGGAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4136 | -188 | 5.6 | ATATGTGATATTTATCACAATT |
|
Position: -128
Score: 3.7 Sequence: GAATGTGCGTTCATGCACATTT
Locus tag: YpesF_010100015749
|
||||
| YpesF_010100015749 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -57
Score: 3.7 Sequence: ATATTTGATCATGATCACTTCC
Locus tag: YpesF_010100015824
|
||||
| YpesF_010100015824 | -57 | 3.7 | ATATTTGATCATGATCACTTCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: peptidase T | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Salmonella typhimurium LT2 | STM1227 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Enterobacter sp. 638 | Ent638_1640 | -31 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Yersinia pestis KIM | y1791 | -27 | 3.7 | ATATTTGATCATGATCACTTCC |
| Serratia proteamaculans 568 | Spro_2009 | -188 | 4.1 | CGTCGTGAAGAAGATCACACAT |
|
Position: -64
Score: 4.3 Sequence: TATTGTGATCGCCATCACTTCC
Locus tag: YpesF_010100016309
|
||||
| YpesF_010100016309 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -131
Score: 4.1 Sequence: AATAGTGATGTATATCTCAACC
Locus tag: YpesF_010100017074
|
||||
| YpesF_010100017074 | -131 | 4.1 | AATAGTGATGTATATCTCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1805 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1818 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02322 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1956 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2236 | -80 | 4.1 | AATAGTGATGTATATCTCAACC |
| Serratia proteamaculans 568 | Spro_2760 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2372 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1166 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2134 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -73
Score: 3.7 Sequence: TGTTGTGTTTGTTATCGAACTA
Locus tag: YpesF_010100017079
|
||||
| YpesF_010100017079 | -73 | 3.7 | TGTTGTGTTTGTTATCGAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rnd | ||||
| Ortholog function: ribonuclease D | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1804 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1817 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02321 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1955 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2235 | -73 | 3.7 | TGTTGTGTTTGTTATCGAACTA |
| Serratia proteamaculans 568 | Spro_2759 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2371 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1167 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2135 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -112
Score: 4 Sequence: AATTGAGAGACAAGTCACAATC
Locus tag: YpesF_010100017249
|
||||
| YpesF_010100017249 | -112 | 4 | AATTGAGAGACAAGTCACAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -144
Score: 4.8 Sequence: AGTTGTGCTATGGCTCACAAAA
Locus tag: YpesF_010100017564
|
||||
| YpesF_010100017564 | -144 | 4.8 | AGTTGTGCTATGGCTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pldB | ||||
| Ortholog function: Lysophospholipase L2 (EC 3.1.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00166 | -60 | 3.8 | TATTGTGTCAGGCATCATAAAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04321 | -56 | 3.8 | TTGTGTGATACACGGTAAAAAA |
| Enterobacter sp. 638 | Ent638_3971 | -56 | 4.3 | TTTTGTGATGCGTCACGAAAAA |
| Yersinia pestis KIM | y0400 | -144 | 4.8 | AGTTGTGCTATGGCTCACAAAA |
| Serratia proteamaculans 568 | Spro_0196 | -88 | 3.8 | TTGTAAGAATTGAATCACAATA |
| -53 | 4.2 | TCTTGTGCCAGAGGTCACATTT | ||
| Edwardsiella tarda EIB202 | ETAE_3343 | -217 | 3.9 | CGGTGTGATAATCCTCAAACTT |
|
Position: -155
Score: 4.4 Sequence: ACCTGTGATTTTGATCACAATC
Locus tag: YpesF_010100017609
|
||||
| YpesF_010100017609 | -155 | 4.4 | ACCTGTGATTTTGATCACAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -165 | 4.6 | AAATGTGAATTGCCGCACACAT |
| Salmonella typhimurium LT2 | STM2284 | -163 | 5 | TAATGTGAATTACAGCACATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -163 | 4.7 | TAATGTGAATTACAGCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -165 | 4.3 | TACTGTGAAACATCGCACAATT |
| -115 | 3.8 | ATGTGAGCACGAAATCACATAA | ||
| Enterobacter sp. 638 | Ent638_2805 | -163 | 4.1 | TACTGTGAATCAACGCACAGAT |
| Yersinia pestis KIM | y0404 | -231 | 3.6 | AATTGTTACCTATTTTATGAAA |
| -155 | 4.4 | ACCTGTGATTTTGATCACAATC | ||
| Serratia proteamaculans 568 | Spro_0200 | -231 | 3.6 | CGCTGTGATGGATGGCGCAATT |
| -138 | 4.9 | AATCGTGATTATGATCACATTC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -148 | 5.1 | TTTAGTGATGCAAATCACACTT |
| Edwardsiella tarda EIB202 | ETAE_3115 | -247 | 4 | TACTGTGAGAGATCGCTCATAT |
| -142 | 4.8 | TAGAGTGATTTTGATCACATTG | ||
| Proteus mirabilis HI4320 | PMI3592 | -262 | 3.7 | TACTGTGAAGTAATACTCAGTT |
| -170 | 5.5 | ATTTGTGATTAGTATCACATAT | ||
|
Position: -251
Score: 3.4 Sequence: ATTTGTCACCCCAGTCACTTAC
Position: -39
Score: 3.3 Sequence: TATAACGATGGCAATCTCAGTA
Locus tag: YpesF_010100017619
|
||||
| YpesF_010100017619 | -251 | 3.4 | ATTTGTCACCCCAGTCACTTAC | |
| -39 | 3.3 | TATAACGATGGCAATCTCAGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0907 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0977 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02165 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00935 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1427 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2784 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2594 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Proteus mirabilis HI4320 | PMI0711 | -119 | 3.5 | TATTTTTGTGTGCTACACATAA |
|
Position: -229
Score: 4.1 Sequence: AAAGTTGAGTGACATCACAAAA
Locus tag: YpesF_010100018059
|
||||
| YpesF_010100018059 | -229 | 4.1 | AAAGTTGAGTGACATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Yersinia pestis KIM | y3600 | -229 | 4.1 | AAAGTTGAGTGACATCACAAAA |
| -109 | 3.6 | TTTTGCGATCAATATCTATAAA | ||
| Serratia proteamaculans 568 | Spro_4321 | -231 | 4.1 | AAAGTTGAGTGATATCACAAAA |
|
Position: -130
Score: 4.2 Sequence: ATTCGTGTTCCATCTCTCATAA
Position: -80
Score: 3.8 Sequence: ATATTTGATAGCTATCGCTGTT
Locus tag: YpesF_010100018494
|
||||
| YpesF_010100018494 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA | |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3403 | -240 | 4.2 | GAATGCGATTCCACTCACAATA |
| -137 | 4 | TTTCGTGACAGGAATCACGGAG | ||
| Salmonella typhimurium LT2 | STM3500 | -241 | 4 | GAATGCGATTACAGTCACATTA |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04825 | -107 | 3.9 | AATCGTGATTTTGTCCAGATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03773 | -242 | 3.7 | GAAAGCGATTACATTCACATTT |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Enterobacter sp. 638 | Ent638_3816 | -241 | 4.1 | GTATGCGATTACATTCACATTA |
| Yersinia pestis KIM | y3918 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Serratia proteamaculans 568 | Spro_4617 | -80 | 4.1 | ATATTTGATACCTATCGCGGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4106 | -81 | 4 | TTTTATGATTGCTATCGCGGTT |
| Edwardsiella tarda EIB202 | ETAE_3277 | -82 | 3.9 | TTTTTTGATGACTATCTCGGTT |
| Proteus mirabilis HI4320 | PMI3015 | -131 | 4 | ATTTGTGCATTAGTTCTCGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0100 | -86 | 3.8 | TTTTTTGATAACTATCGCTGTT |
|
Position: -186
Score: 3.7 Sequence: TATTGTGACTGCGTTAGCTTTG
Locus tag: YpesF_010100018514
|
||||
| YpesF_010100018514 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: igaA | ||||
| Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3398 | -288 | 3.6 | TTGTGCGATATCGGACACGCTT |
| -123 | 3.8 | TACTGTGATGTGCTTAATGATG | ||
| Salmonella typhimurium LT2 | STM3495 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04821 | -290 | 3.9 | TTGTGCGATATACAGCACGGTT |
| -238 | 3.7 | TTATGTAACGTAGTAAAAATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03769 | -282 | 3.8 | TTGTGCGATACGCAACACGCTT |
| Enterobacter sp. 638 | Ent638_3811 | -287 | 3.7 | TTGTGCGATATGACGCACGGTT |
| Yersinia pestis KIM | y3922 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG |
|
Position: -319
Score: 3.9 Sequence: ATTGGTGACTGACATCAAGATA
Position: -163
Score: 3.7 Sequence: TTATTTGTCTATGCTCACAGAA
Locus tag: YpesF_010100018649
|
||||
| YpesF_010100018649 | -319 | 3.9 | ATTGGTGACTGACATCAAGATA | |
| -163 | 3.7 | TTATTTGTCTATGCTCACAGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galE2 | ||||
| Ortholog function: UDP-galactose-4-epimerase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0759 | -78 | 3.8 | TAATTTATTCCATGTCACACTT |
| Salmonella typhimurium LT2 | STM0776 | -78 | 3.7 | TAATTTATTACATGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02376 | -36 | 3.7 | TAATATATTCCATGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00773 | -78 | 3.7 | TAACTTGTGCTATGTCACACTT |
| -44 | 4.1 | ATATGCTATCTTCCTCACAAAC | ||
| Yersinia pestis KIM | y3043 | -163 | 3.7 | TTATTTGTCTATGCTCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1389 | -72 | 3.7 | ATTCTCGCTGTAGATCACCTTT |
| Edwardsiella tarda EIB202 | ETAE_2564 | -195 | 3.7 | TAGTGTAAGCGATACCACAAAC |
|
Position: -116
Score: 4.7 Sequence: TTATGAGATGTCAGTCACAAAA
Locus tag: YpesF_010100019034
|
||||
| YpesF_010100019034 | -116 | 4.7 | TTATGAGATGTCAGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glk | ||||
| Ortholog function: glucokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2388 | -116 | 4.1 | TTGTGTGACCCAGATCGATATT |
| Salmonella typhimurium LT2 | STM2403 | -116 | 3.9 | TTCTGTGATGAAGATCTATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00412 | -116 | 4.5 | TTATGTGATGCAGATCGATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02738 | -117 | 4.4 | AAATGTGACCTGTGTCGCTAAA |
| Enterobacter sp. 638 | Ent638_2921 | -116 | 3.8 | TTCTGTGACGAAGATCGATTAT |
| Yersinia pestis KIM | y1505 | -113 | 4.7 | TTATGAGATGTCAGTCACAAAA |
| Serratia proteamaculans 568 | Spro_3407 | -116 | 4.8 | TTTTGTGATCCGGATCGCTAAT |
|
Position: -136
Score: 4.4 Sequence: TTATGTGATCAAGCCCACTAAT
Position: -84
Score: 3.9 Sequence: ATTTGTGGTTCACATCTCTTTT
Locus tag: YpesF_010100019069
|
||||
| YpesF_010100019069 | -136 | 4.4 | TTATGTGATCAAGCCCACTAAT | |
| -84 | 3.9 | ATTTGTGGTTCACATCTCTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC | ||||
| Ortholog function: Nucleoside permease NupC | ||||
| Yersinia pestis KIM | y1499 | -136 | 4.4 | TTATGTGATCAAGCCCACTAAT |
| -84 | 3.9 | ATTTGTGGTTCACATCTCTTTT | ||
| Serratia proteamaculans 568 | Spro_3416 | -84 | 3.6 | ATTTGCAATAGACCTCTCGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3183 | -84 | 3.7 | TTTTGCGTCCTTCCTCTCATTT |
| -31 | 3.9 | AAATTTGGCCTGCCTCATATTT | ||
|
Position: -152
Score: 3.7 Sequence: AAATTAGACACAGGTCATATTA
Locus tag: YpesF_010100019284
|
||||
| YpesF_010100019284 | -152 | 3.7 | AAATTAGACACAGGTCATATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hexR | ||||
| Ortholog function: Phosphogluconate repressor HexR, RpiR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1853 | -151 | 3.9 | AAATCTGACACTGATCATGTTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02368 | -134 | 3.6 | AAATACGACCCTGATCATGTAA |
| Yersinia pestis KIM | y2245 | -152 | 3.7 | AAATTAGACACAGGTCATATTA |
| Proteus mirabilis HI4320 | PMI1156 | -58 | 3.6 | AACCGTTATAGATTTCTCCTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2121 | -132 | 3.7 | TTTTATGAAAAACATTAAATTA |
|
Position: -222
Score: 4.1 Sequence: TAATATGACCTGTGTCTAATTT
Locus tag: YpesF_010100019289
|
||||
| YpesF_010100019289 | -222 | 4.1 | TAATATGACCTGTGTCTAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -211
Score: 3.9 Sequence: AGATGTGAGCCATATAACCTCT
Locus tag: YpesF_010100020550
|
||||
| YpesF_010100020550 | -211 | 3.9 | AGATGTGAGCCATATAACCTCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppB | ||||
| Ortholog function: dipeptide ABC transporter, permease protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04993 | -121 | 3.8 | TTATGTGAACGGAATCCCCATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03898 | -62 | 4 | ATATGCAAACAACATCACAATT |
| Yersinia pestis KIM | y3826 | -211 | 3.9 | AGATGTGAGCCATATAACCTCT |
| Serratia proteamaculans 568 | Spro_0139 | -271 | 3.8 | TTGTTTGCTGTTTCTCACAGTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0301 | -223 | 3.7 | AAATGTGCGCATTGTCATGTTT |
|
Position: -84
Score: 4.8 Sequence: AAAAGTGATCTCGATCATACAT
Locus tag: YpesF_010100020892
|
||||
| YpesF_010100020892 | -84 | 4.8 | AAAAGTGATCTCGATCATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -228
Score: 4.8 Sequence: TTTGGTGATATATATCACATTC
Locus tag: YpesF_010100021137
|
||||
| YpesF_010100021137 | -228 | 4.8 | TTTGGTGATATATATCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2913 | -210 | 4.1 | TTTGGTGACATGTGTCACGCTT |
| Salmonella typhimurium LT2 | STM3062 | -217 | 4.5 | TTTGGTGACATGTATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03348 | -214 | 4.6 | TTTGGTGACTTCTGTCACATTT |
| Enterobacter sp. 638 | Ent638_3332 | -215 | 4.1 | TTCGGTGACTTGTATCACGTTT |
| Yersinia pestis KIM | y3301 | -126 | 4.8 | TTTGGTGATATATATCACATTC |
| Serratia proteamaculans 568 | Spro_3923 | -215 | 4.4 | TTTGGTGACATATGTCACATTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3905 | -214 | 3.9 | TTTGGTACTTAATATCACATTT |
| Proteus mirabilis HI4320 | PMI2031 | -210 | 4 | TTCAGTGATATATATCACACGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3605 | -207 | 4.4 | TTTAGTGATATATTTCATATCT |
| -178 | 4.2 | TTATTTGATCTAAATCCTAATT | ||
| -105 | 4.4 | TTATGTGATGGGAATAGCAATC | ||
|
Position: -114
Score: 4.2 Sequence: AACTGTGATCTCGCTAGAATTA
Locus tag: YpesF_010100021142
|
||||
| YpesF_010100021142 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpiA | ||||
| Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03349 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG |
| Enterobacter sp. 638 | Ent638_3333 | -47 | 3.8 | TAATGTGACACCGGTCACAGGG |
| Yersinia pestis KIM | y3302 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA |
| Edwardsiella tarda EIB202 | ETAE_2950 | -276 | 4 | TTTTGTTATGTATAAAACGTTA |
| Proteus mirabilis HI4320 | PMI2032 | -96 | 3.8 | TAAAATGTTGTGTCTCAAATTT |
|
Position: -249
Score: 3.7 Sequence: TAATTCTAGCGAGATCACAGTT
Locus tag: YpesF_010100021147
|
||||
| YpesF_010100021147 | -249 | 3.7 | TAATTCTAGCGAGATCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iciA | ||||
| Ortholog function: chromosome replication initiation inhibitor protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03350 | -107 | 3.8 | CCCTGCGATGCAGATCACACAA |
| Enterobacter sp. 638 | Ent638_3334 | -126 | 3.9 | CCCTGTGACCGGTGTCACATTA |
| -48 | 3.7 | ATTTGTGTCATAGTGCAGAATA | ||
| Yersinia pestis KIM | y3303 | -249 | 3.7 | TAATTCTAGCGAGATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_2951 | -48 | 3.8 | TAACGTTTTATACATAACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3610 | -41 | 3.6 | CATAGTGATATTCAGAAAAATA |
|
Position: -216
Score: 3.7 Sequence: AATTGTGCCCTTTTTCAGGGAA
Locus tag: YpesF_010100021767
|
||||
| YpesF_010100021767 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: epd | ||||
| Ortholog function: D-erythrose 4-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2927 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3070 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04297 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03356 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3340 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2813 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3309 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3913 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2958 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0241 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -4
Score: 3.9 Sequence: TATCATGAAAAACATCAAAAAT
Locus tag: YpesF_010100022457
|
||||
| YpesF_010100022457 | -4 | 3.9 | TATCATGAAAAACATCAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycfR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1112 | -114 | 3.7 | ATTAATGATTGTTATAAAAAAT |
| -87 | 4.8 | GTATGTGATCCAGATCACATCT | ||
| Salmonella typhimurium LT2 | STM1214 | -88 | 4.7 | ACGTGTGATGTAGATCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_01942 | -113 | 3.8 | TATAATGATCGTTATAAAAAAA |
| -86 | 4.5 | ACGTGTGACCTGGATCACATCT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01110 | -95 | 4.9 | ACGTGTGACATAGATCACATTA |
| Enterobacter sp. 638 | Ent638_1627 | -91 | 4.7 | ACGTGTGATGCAGATCACATCT |
| Serratia proteamaculans 568 | Spro_4435 | -116 | 3.7 | TTATTTGATAAAGATTATCAAA |
|
Position: -129
Score: 4.4 Sequence: AAATGTTACCTCCATCACGCAT
Position: -57
Score: 3.6 Sequence: AATCGTGAGCGAAAACGAACAT
Locus tag: YpesF_010100022557
|
||||
| YpesF_010100022557 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT | |
| -57 | 3.6 | AATCGTGAGCGAAAACGAACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -276
Score: 4.3 Sequence: TTATGTGAACGAATTAACACTG
Locus tag: YpesF_010100023082
|
||||
| YpesF_010100023082 | -276 | 4.3 | TTATGTGAACGAATTAACACTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -57
Score: 4.1 Sequence: ATTTGTGTGCTGAATCGCGTTA
Locus tag: YpesF_010100023347
|
||||
| YpesF_010100023347 | -57 | 4.1 | ATTTGTGTGCTGAATCGCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yidA | ||||
| Ortholog function: Phosphatase YidA | ||||
| Yersinia pestis KIM | y4109 | -57 | 4.1 | ATTTGTGTGCTGAATCGCGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4428 | -228 | 3.8 | TTACGTTATACCCGTCATACTT |
|
Position: -238
Score: 4.4 Sequence: AAATGGGATCTGAATCCCAAAT
Locus tag: YpesF_010100023762
|
||||
| YpesF_010100023762 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -137
Score: 4.5 Sequence: ATCTGTGACCCCCTTAACATAA
Locus tag: YpesF_010100023957
|
||||
| YpesF_010100023957 | -137 | 4.5 | ATCTGTGACCCCCTTAACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: cytochrome o ubiquinol oxidase subunit II | ||||
| Yersinia pestis KIM | y1021 | -137 | 4.5 | ATCTGTGACCCCCTTAACATAA |
| Serratia proteamaculans 568 | Spro_1090 | -135 | 4.2 | ATCTGTGACCCCCTTAACAGAA |
| Proteus mirabilis HI4320 | PMI0108 | -194 | 3.6 | AAATTATAGTTAATTCACAATA |
| -147 | 3.6 | TTAATTACTTGTGATCACATTA | ||
| -141 | 4.3 | ACTTGTGATCACATTAACACAA | ||
|
Position: -231
Score: 3.9 Sequence: ATAGATGAGCAATGTCACATAA
Locus tag: YpesF_010100024757
|
||||
| YpesF_010100024757 | -231 | 3.9 | ATAGATGAGCAATGTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manX | ||||
| Ortholog function: PTS enzyme IIAB, mannose-specific | ||||
| Yersinia pestis KIM | y2551 | -231 | 3.9 | ATAGATGAGCAATGTCACATAA |
|
Position: -113
Score: 3.8 Sequence: CTTTATGACTGCTTTCACCATT
Locus tag: YpesF_010100025072
|
||||
| YpesF_010100025072 | -113 | 3.8 | CTTTATGACTGCTTTCACCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadR | ||||
| Ortholog function: fatty acid metabolism regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1187 | -21 | 3.9 | CTGTGTTATGGAAATCTCACTA |
| Salmonella typhimurium LT2 | STM1805 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Enterobacter sp. 638 | Ent638_2365 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Yersinia pestis KIM | y2177 | -113 | 3.8 | CTTTATGACTGCTTTCACCATT |
| Proteus mirabilis HI4320 | PMI1510 | -111 | 4.4 | TTTTATGATGCCATTCACTATT |
| -84 | 3.8 | ATGGTTGAGCTATATCAAAATT | ||