Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: Fur - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_2084
Regulated genes 17
Built upon 200 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -74
Score: 6.5
Sequence: ATTGAAAATGATTATCAAT
Locus tag: BPUM_0425
BPUM_0425 -74 6.5 ATTGAAAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbN
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU04530 -164 6.7 ATTGATAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_004860 -208 6.1 ACTGATAATGATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_0425 -74 6.5 ATTGAAAATGATTATCAAT
Bacillus licheniformis DSM 13 BLi00541 -207 6.7 ATTGATAATGATTATCAAT
Position: -58
Score: 5.8
Sequence: AATGAGAATCAATATCACT
Locus tag: BPUM_0777
BPUM_0777 -58 5.8 AATGAGAATCAATATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgT
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus pumilus SAFR-032 BPUM_0777 -58 5.8 AATGAGAATCAATATCACT
Bacillus pumilus SAFR-032 BPUM_0777 -64 5.4 TATGATAATGAGAATCAAT
-58 5.8 AATGAGAATCAATATCACT
Bacillus clausii KSM-K16 ABC0094 -29 6 AGTGAGAATGATTTTCATT
-23 5 AATGATTTTCATTATCCTA
Position: -45
Score: 5.9
Sequence: AATGAGAATCAATTTCAAT
Locus tag: BPUM_0791
BPUM_0791 -45 5.9 AATGAGAATCAATTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfhC
Ortholog function: Putative nitroreductase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU08480 -40 6.5 AATGATAATCATTTTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_008550 -40 6.5 AATGATAATCATTTTCATT
Bacillus pumilus SAFR-032 BPUM_0791 -45 5.9 AATGAGAATCAATTTCAAT
Bacillus licheniformis DSM 13 BLi00873 -33 6.5 AATGATAATCATTTTCATT
Bacillus cereus ATCC 14579 BC0786 -67 6.2 ATTGAAAATCAATATCAAT
Bacillus halodurans C-125 BH0303 -91 6.1 TTTGAAAATGATTATCATT
Bacillus clausii KSM-K16 ABC0928 -80 5.6 AATGAAAATGAGAATCATT
Oceanobacillus iheyensis HTE831 OB0528 -41 6.5 ATTGATAATAATTATCAAT
Position: -57
Score: 6.4
Sequence: ATTGATAATGATAATCATT
Locus tag: BPUM_0984
BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclN
Ortholog function: Iron compound ABC uptake transporter permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU03800 -98 6.4 AATGATAATGATAATCAAT
-92 4.9 AATGATAATCAATTACTAT
Bacillus amyloliquefaciens FZB42 RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Bacillus pumilus SAFR-032 BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Bacillus licheniformis DSM 13 BLi00463 -46 6.4 ATTGATAATGATaATCAtT
Bacillus cereus ATCC 14579 BC5105 -107 6.5 AATGAAAATGATTATCAAT
Bacillus halodurans C-125 BH1025 -71 6.1 AATGATAATGCTTATCATT
-49 6.2 ACTGATAATGATTATCACT
Bacillus clausii KSM-K16 ABC2895 -129 4.5 AGCGAGATTCTTTCTCATT
-68 6.2 ATTGATAATGAGTATCATT
Oceanobacillus iheyensis HTE831 OB0539 -61 5.2 CTTAATAATGATAATCATT
-55 6.5 AATGATAATCATTTTCAAT
Position: -36
Score: 6.2
Sequence: AATGATAATCTTTATCAAT
Locus tag: BPUM_1019
BPUM_1019 -36 6.2 AATGATAATCTTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)
Bacillus pumilus SAFR-032 BPUM_1019 -36 6.2 AATGATAATCTTTATCAAT
Bacillus licheniformis DSM 13 BLi01183 -35 6.2 AATGATAATCTTTATCAAT
Bacillus halodurans C-125 BH2624 -100 5.9 GATGATTATCATTATCAAT
-59 6.5 AATGATAATCATTATCACT
Position: -75
Score: 6.5
Sequence: AATGAAAATCATTATCATT
Position: -38
Score: 6.5
Sequence: ATTGAAAATGATTATCATT
Locus tag: BPUM_1312
BPUM_1312 -75 6.5 AATGAAAATCATTATCATT
-38 6.5 ATTGAAAATGATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykuN
Ortholog function: Flavodoxin
Bacillus subtilis subsp. subtilis str. 168 BSU14150 -71 6.5 AATGAAAATCATTATCATT
-34 6 ATTGAAAATCATTATCAAC
Bacillus amyloliquefaciens FZB42 RBAM_013920 -70 6.5 AATGAAAATCATTATCATT
-33 6.5 AATGAAAATCATTATCAAT
Bacillus pumilus SAFR-032 BPUM_1312 -75 6.5 AATGAAAATCATTATCATT
-38 6.5 ATTGAAAATGATTATCATT
Bacillus cereus ATCC 14579 BC3541 -48 5.9 ATTGAAATTGATTCTCATT
-21 5.5 AATGAGAATGAGAATCATT
Bacillus clausii KSM-K16 ABC1100 -63 6.5 ATTGAAAATGATTATCAAT
-57 6 AATGATTATCAATATCATT
Position: -303
Score: 6.5
Sequence: ATTGAAAATCATTATCAAT
Position: -267
Score: 5.8
Sequence: AATGATAAGCATTCTCAAT
Locus tag: BPUM_1939
BPUM_1939 -303 6.5 ATTGAAAATCATTATCAAT
-267 5.8 AATGATAAGCATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ypbR
Ortholog function: Putative GTP-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU22030 -333 5.7 ATTGAAAATCATTCTCAAC
-300 5.4 TTTGAAAAAGATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_020180 -349 6.2 ATTGAAAATCATTCTCAAT
-314 5.8 TATGAAAATGATTCTCATT
Bacillus pumilus SAFR-032 BPUM_1939 -303 6.5 ATTGAAAATCATTATCAAT
-267 5.8 AATGATAAGCATTCTCAAT
Bacillus licheniformis DSM 13 BLi02343 -307 6.5 ATTGAAAATGATTATCATT
-277 5.4 GATGATAAACATTCTCATT
Bacillus cereus ATCC 14579 BC1572 -358 5.4 GTTGATAATGATTCTCTTT
-319 6.1 AGTGATAATCATTATCAAA
Position: -146
Score: 5.2
Sequence: TGTGATAAGCATTCTCATT
Locus tag: BPUM_2037
BPUM_2037 -146 5.2 TGTGATAAGCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fer
Ortholog function: Ferredoxin
Bacillus subtilis subsp. subtilis str. 168 BSU23040 -142 5.2 TGTGATAAGCATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_021190 -141 5.2 TGTGATAAGCATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_2037 -146 5.2 TGTGATAAGCATTCTCATT
Bacillus cereus ATCC 14579 BC1483 -116 6.1 ATTGATAAGCATTATCATT
Position: -118
Score: 4.6
Sequence: AATTATAATCGTTATTAAA
Position: -78
Score: 4.7
Sequence: ATTTAAAATGATTATAGTT
Locus tag: BPUM_2084
BPUM_2084 -118 4.6 AATTATAATCGTTATTAAA
-78 4.7 ATTTAAAATGATTATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Transcriptional regulator for iron transport and metabolism, Fur family
Bacillus amyloliquefaciens FZB42 RBAM_021640 -118 4.8 TTTTAGAATGATTATCACA
Bacillus pumilus SAFR-032 BPUM_2084 -78 4.7 ATTTAAAATGATTATAGTT
Bacillus licheniformis DSM 13 BLi02503 -119 5 ATTTATAATGATTATTAAA
-79 4.9 ATTTATAATGATTATAGTT
Geobacillus kaustophilus HTA426 GK2317 -102 5.3 TATAATAACCATTATCATT
Bacillus cereus ATCC 14579 BC4091 -101 5.8 TTTGAGAATAATTATCAAT
Bacillus halodurans C-125 BH1527 -103 4.7 ACTAATAATAATTATCTGT
-79 5.4 AATAATAATCATTATTAAT
Bacillus clausii KSM-K16 ABC1780 -102 4.9 AATGATATTCATTTGCAGA
Oceanobacillus iheyensis HTE831 OB1849 -96 4.8 TATTATAATTATTATAATT
Paenibacillus sp. JDR-2 Pjdr2_1270 -77 5.1 AATTATAATCATTCTAAAT
Position: -35
Score: 5.6
Sequence: AGTGATAACAATTTTCATT
Locus tag: BPUM_2873
BPUM_2873 -35 5.6 AGTGATAACAATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Ferredoxin--NADP reductase 2
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -36 5.2 ATTAATAACAATTTTCATT
Bacillus amyloliquefaciens FZB42 RBAM_029160 -35 5.2 ATTAATAACAATTTTCAAT
Bacillus pumilus SAFR-032 BPUM_2873 -35 5.6 AGTGATAACAATTTTCATT
Bacillus licheniformis DSM 13 BLi03393 -36 4.9 ATTAAGAACAATTTTCATT
Bacillus clausii KSM-K16 ABC2925 -39 4.9 AATGAGAAAGGATTTCATT
Oceanobacillus iheyensis HTE831 OB2351 -324 5 TATCATTTTCATTATCAAT
Position: -126
Score: 5.9
Sequence: ATTGAAAATGATTTTCAAA
Locus tag: BPUM_2949
BPUM_2949 -126 5.9 ATTGAAAATGATTTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yusV
Ortholog function: Iron(III)-siderophore transporter (ATP binding component)
Bacillus subtilis subsp. subtilis str. 168 BSU32940 -171 5.9 ATTGAAAATGATTTTCAAA
Bacillus amyloliquefaciens FZB42 RBAM_030060 -124 5.5 ATTGATAATGATATTCAGA
Bacillus pumilus SAFR-032 BPUM_2949 -126 5.9 ATTGAAAATGATTTTCAAA
Bacillus licheniformis DSM 13 BLi03472 -81 5.8 ATTGAAAATGATTTTCAAG
Anoxybacillus flavithermus WK1 Aflv_1269 -153 5.4 TTTGAAAATGATTTTCGTT
-113 6.2 AATGATAATCATTGTCAAT
-29 4.9 ACTGATATTCGATATCAAA
Oceanobacillus iheyensis HTE831 OB0450 -93 6.3 ATTGAAAATTATTATCATT
Paenibacillus sp. JDR-2 Pjdr2_4368 -170 5 GATGATAATATTTCTCACT
-111 5.2 TTTGATAACGATTCTCATA
Position: -58
Score: 6.7
Sequence: ATTGATAATCATTATCATT
Locus tag: BPUM_2992
BPUM_2992 -58 6.7 ATTGATAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuB
Ortholog function: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33310 -65 5.3 AAAGAGAATCATTATCATC
Bacillus amyloliquefaciens FZB42 RBAM_030430 -185 5.5 AAAGAGAATCATTATCAGT
-49 6.7 ATTGATAATCATTATCATT
Bacillus pumilus SAFR-032 BPUM_2992 -234 6 TATGATAATGATTCTCAAT
-58 6.7 ATTGATAATCATTATCATT
Bacillus licheniformis DSM 13 BLi03521 -46 5.5 AATGATAATCGTTATCGGT
Bacillus halodurans C-125 BH1083 -51 6.5 AGTGATAATGATTATCAAT
Position: -44
Score: 6
Sequence: ATTGAGAATCATTATCATA
Locus tag: BPUM_2994
BPUM_2994 -44 6 ATTGAGAATCATTATCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuD
Ortholog function: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33320 -184 6.4 ACTGATAATGATTATCAAT
-51 5.3 GATGATAATGATTCTCTTT
Bacillus amyloliquefaciens FZB42 RBAM_030440 -187 6.7 AATGATAATGATTATCAAT
-51 5.5 ACTGATAATGATTCTCTTT
Bacillus pumilus SAFR-032 BPUM_2994 -220 6.7 AATGATAATGATTATCAAT
-44 6 ATTGAGAATCATTATCATA
Bacillus licheniformis DSM 13 BLi02658 -53 5.8 ATTGATAATGATTCTCTTT
Position: -40
Score: 5.7
Sequence: AATGAAAATGATTATCAGC
Locus tag: BPUM_3070
BPUM_3070 -40 5.7 AATGAAAATGATTATCAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
Bacillus pumilus SAFR-032 BPUM_3070 -40 5.7 AATGAAAATGATTATCAGC
-34 5.1 AATGATTATCAGCATCAAT
Bacillus licheniformis DSM 13 BLi02811 -241 6.3 AATGATTATCATTATCATT
-41 6 AATGAAAATGATTATCAAC
Bacillus halodurans C-125 BH0567 -51 6.1 TTTGAAAATGATTATCATT
-35 4.6 ATTGTTAATTATATTCAGA
Position: -46
Score: 6.5
Sequence: ATTGAAAATGATTATCAAT
Locus tag: BPUM_3379
BPUM_3379 -46 6.5 ATTGAAAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywjA
Ortholog function: Multidrug resistance ABC transporter ATP-binding and permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU37230 -44 5.4 ATTGAGAAATATTATCAGT
Bacillus amyloliquefaciens FZB42 RBAM_034370 -47 5.7 ATTGAGAAATATTATCATT
Bacillus pumilus SAFR-032 BPUM_3379 -46 6.5 ATTGAAAATGATTATCAAT
Bacillus cereus ATCC 14579 BC5182 -57 5.9 TTTGATAATGGTTATCATT
Bacillus halodurans C-125 BH3891 -52 6.1 ATTGAGAATGAATATCAAT
Paenibacillus sp. JDR-2 Pjdr2_0424 -137 5.9 TATGATAATGATTATCAAC
Position: -196
Score: 5.6
Sequence: TTTGATATTGATAATCATT
Position: -190
Score: 6.3
Sequence: ATTGATAATCATTTTCACT
Locus tag: BPUM_3700
BPUM_3700 -196 5.6 TTTGATATTGATAATCATT
-190 6.3 ATTGATAATCATTTTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: btr
Ortholog function: Transcriptional regulator of Fe-bacillibactin uptake, AraC family
Bacillus subtilis subsp. subtilis str. 168 BSU01640 -47 6.5 ATTGAAAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002130 -50 5.6 AATGATAACAGTTATCATT
Bacillus pumilus SAFR-032 BPUM_3700 -196 5.6 TTTGATATTGATAATCATT
-190 6.3 ATTGATAATCATTTTCACT
Bacillus clausii KSM-K16 ABC3488 -37 6.7 ATTGATAATGATTATCAAT
Position: -34
Score: 5.5
Sequence: ATTGAGAACAATTATCAGT
Locus tag: BPUM_3701
BPUM_3701 -34 5.5 ATTGAGAACAATTATCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feuA
Ortholog function: Fe3+-bacillibactin ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU01630 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002120 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus pumilus SAFR-032 BPUM_3701 -34 5.5 ATTGAGAACAATTATCAGT
Bacillus licheniformis DSM 13 BLi03906 -302 5.1 TATCATTATGATTTTCATT
-41 6.1 ATTGATAATAGTTATCAAT
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