Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus pumilus SAFR-032

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus SAFR-032
Orthologous TF(s) BPUM_2620
Regulated genes 65
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus pumilus SAFR-032
Locus tag Position Score Sequence
Position: -35
Score: 4.6
Sequence: TTGTAAACGAATTCAA
Locus tag: BPUM_0145
BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -221
Score: 4.6
Sequence: AAGAAAGCGTTGACAT
Locus tag: BPUM_0209
BPUM_0209 -221 4.6 AAGAAAGCGTTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglP1
Ortholog function: PTS system, beta-glucoside-specific enzyme II, ABC component
Bacillus clausii KSM-K16 ABC3790 -210 4.4 ATGAAAGCGTTGACGG
Bacillus halodurans C-125 BH0296 -223 5.2 ATGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04200 -297 5.2 ATGAAAGCGTTGACAA
Bacillus pumilus SAFR-032 BPUM_0209 -221 4.6 AAGAAAGCGTTGACAT
Position: -216
Score: 5.2
Sequence: ATGTAAGCGTTTTCTT
Locus tag: BPUM_0244
BPUM_0244 -216 5.2 ATGTAAGCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glsA1
Ortholog function: Glutaminase (EC 3.5.1.2)
Bacillus amyloliquefaciens FZB42 RBAM_002800 -62 5 TTGAAAACGTTTTCCA
Bacillus halodurans C-125 BH2717 -32 5.3 ATGTAAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00274 -208 4.9 TTGAAAACGCTTATAT
Bacillus pumilus SAFR-032 BPUM_0244 -216 5.2 ATGTAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU02430 -81 4.4 ATGAAAGCGTTTAACG
Position: -106
Score: 4.1
Sequence: GTGAAAGCGTTTTACG
Locus tag: BPUM_0369
BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -60
Score: 5
Sequence: TTGAAAGCGTTTTATA
Locus tag: BPUM_0388
BPUM_0388 -60 5 TTGAAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlR
Ortholog function: Mannitol operon activator, BglG family
Anoxybacillus flavithermus WK1 Aflv_1564 -65 4.4 TTGAAAGCGGATGAAT
Bacillus amyloliquefaciens FZB42 RBAM_004390 -96 5 TTGAAAGCGTTTTATA
Bacillus halodurans C-125 BH3853 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00508 -96 4.2 TTGACAGCGTTTTATG
Bacillus pumilus SAFR-032 BPUM_0388 -60 5 TTGAAAGCGTTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU04160 -99 5 TTGAAAGCGTTTTATA
Oceanobacillus iheyensis HTE831 OB2602 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6225 -33 4.1 AAGAAAGCGATTTTAT
Position: -72
Score: 4.8
Sequence: TTGAAATCGCTATCAT
Locus tag: BPUM_0419
BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Bacillus amyloliquefaciens FZB42 RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Bacillus subtilis subsp. subtilis str. 168 BSU04470 -64 5.3 ATGAAAACGCTATCAT
Position: -59
Score: 5.1
Sequence: TTGAAAGCGCTTTTAT
Locus tag: BPUM_0455
BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: -38
Score: 5
Sequence: AAGAAAACGCTTTCAA
Locus tag: BPUM_0463
BPUM_0463 -38 5 AAGAAAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglS
Ortholog function: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
Bacillus amyloliquefaciens FZB42 RBAM_036190 -230 4.9 ATGAAAGCGTTGGCAT
-34 4.5 AAGAAATCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_0463 -38 5 AAGAAAACGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU39070 -34 5 TAGAAAACGCTTTCAA
Position: -215
Score: 5
Sequence: ATGTAAGCGCTACCAA
Locus tag: BPUM_0644
BPUM_0644 -215 5 ATGTAAGCGCTACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Bacillus amyloliquefaciens FZB42 RBAM_007070 -196 5 ATGAAAACGCTACCAA
Bacillus licheniformis DSM 13 BLi00730 -200 5.5 ATGAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_0644 -215 5 ATGTAAGCGCTACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU06670 -205 4.4 AATAAAACGCTTTCAA
Position: -33
Score: 5.2
Sequence: ATGAAAGCGTATACAA
Locus tag: BPUM_0710
BPUM_0710 -33 5.2 ATGAAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citM
Ortholog function: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Bacillus amyloliquefaciens FZB42 RBAM_007810 -33 5.1 ATGTAAGCGTATTCAT
Bacillus licheniformis DSM 13 BLi00221 -33 4.9 ATGTAAGCGGATTCAT
Bacillus pumilus SAFR-032 BPUM_0710 -33 5.2 ATGAAAGCGTATACAA
Bacillus subtilis subsp. subtilis str. 168 BSU07610 -32 4.9 ATGTAAGCGGATTCAT
Position: -121
Score: 4.6
Sequence: ATGAAAGCGCTACATT
Locus tag: BPUM_0728
BPUM_0728 -121 4.6 ATGAAAGCGCTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus pumilus SAFR-032 BPUM_0728 318 4 GTGAAAACGCTTGCGG
Position: -191
Score: 4.9
Sequence: TTGACAACGTTTTCAT
Locus tag: BPUM_0882
BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -41
Score: 4.1
Sequence: AGTGAAGCGCTTTCAA
Locus tag: BPUM_0922
BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -104
Score: 4.9
Sequence: TTGAAAGGGTTTTCAA
Locus tag: BPUM_1233
BPUM_1233 -104 4.9 TTGAAAGGGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykoM
Ortholog function: Putative transcriptional regulator, MarR family
Bacillus amyloliquefaciens FZB42 RBAM_013160 -51 4.6 TTGTAAGGGTTTACAT
Bacillus licheniformis DSM 13 BLi01493 -59 4.7 TTGTAAGGGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_1233 -104 4.9 TTGAAAGGGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU13340 -51 4.7 ATGTAAGGGTTTTCAT
Position: -30
Score: 4.7
Sequence: ATGAATACGTTTTCAA
Locus tag: BPUM_1334
BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -116
Score: 4.5
Sequence: ATGAAAGCGTTAAACT
Locus tag: BPUM_1387
BPUM_1387 -116 4.5 ATGAAAGCGTTAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbB
Ortholog function: CBS domain protein
Bacillus amyloliquefaciens FZB42 RBAM_014810 -95 4.3 ATGAAAGCGTTACACT
Bacillus licheniformis DSM 13 BLi01712 -142 4.5 ATGAAAGCGTTAAACT
Bacillus pumilus SAFR-032 BPUM_1387 -116 4.5 ATGAAAGCGTTAAACT
Bacillus subtilis subsp. subtilis str. 168 BSU14950 -97 4.5 ATGAAAGCGTTAAACT
Position: -58
Score: 4.8
Sequence: ATGAAAACGCCTTCAA
Locus tag: BPUM_1403
BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbP
Ortholog function: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Bacillus clausii KSM-K16 ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01727 -48 4.5 AAAAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU15100 -48 4.4 AATAAAGCGTTTACAA
Oceanobacillus iheyensis HTE831 OB1458 -59 4.3 TAGGAAGCGTTATCTT
Position: -166
Score: 4.8
Sequence: TTGAAGGCGTTTTCAT
Locus tag: BPUM_1404
BPUM_1404 -166 4.8 TTGAAGGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbA
Ortholog function: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Bacillus amyloliquefaciens FZB42 RBAM_014970 -132 4.9 TTGTAAACGCTTTAAT
Bacillus clausii KSM-K16 ABC2368 -98 4.8 ATGAAAACGCATTAAA
Bacillus licheniformis DSM 13 BLi01728 -150 4.6 TTGTAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_1404 -166 4.8 TTGAAGGCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU15110 -127 4.7 TTGTAAACGCTTTATT
Position: -57
Score: 4.8
Sequence: ATGAAAGCGCAGTCTA
Locus tag: BPUM_1507
BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -78
Score: 4.4
Sequence: TTGAAAGCGCTTTACC
Locus tag: BPUM_1754
BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmR
Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2227 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01139 -75 4.2 TTGAAAACTTTTACCT
Bacillus pumilus SAFR-032 BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30260 -86 4.8 TTGTAACCGCTTACTT
Position: -35
Score: 4.8
Sequence: ATGTAAACGCTTACCA
Locus tag: BPUM_1785
BPUM_1785 -35 4.8 ATGTAAACGCTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngI
Ortholog function: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Bacillus amyloliquefaciens FZB42 RBAM_018380 -44 5.2 ATGAAAACGTTTACTA
Bacillus halodurans C-125 BH1131 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02144 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1785 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18250 -41 4.8 ATGTAAACGCTTTCCT
Geobacillus kaustophilus HTA426 GK1598 -103 4.9 TTGAAAACGCTTCAAA
Oceanobacillus iheyensis HTE831 OB2217 -64 4.9 TTGTAAGCGGTTACTT
Position: -90
Score: 5.1
Sequence: TTGAAAGCGCTTTATA
Locus tag: BPUM_1832
BPUM_1832 -90 5.1 TTGAAAGCGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynP
Ortholog function: Putative H+-xyloside symporter
Bacillus amyloliquefaciens FZB42 RBAM_017320 -104 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_1832 -90 5.1 TTGAAAGCGCTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU17570 -99 5.1 TTGAAAGCGCTTTTAT
Position: -101
Score: 4.7
Sequence: TTGGAAGCGTTTTATT
Locus tag: BPUM_1862
BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -43
Score: 4.3
Sequence: ATGTAAGCCTATACAT
Locus tag: BPUM_2004
BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -82
Score: 4.5
Sequence: TTGTAAACGGTTTATA
Locus tag: BPUM_2081
BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: drm
Ortholog function: Phosphopentomutase (EC 5.4.2.7)
Anoxybacillus flavithermus WK1 Aflv_0998 -114 4.9 ATGAAAACGTTTTATA
Bacillus amyloliquefaciens FZB42 RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Bacillus cereus ATCC 14579 BC4087 -222 4.5 AAGAAAGCGTAAACAT
Bacillus licheniformis DSM 13 BLi02500 -99 4.1 GTGTAAACGGTTTATA
Bacillus pumilus SAFR-032 BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU23500 -77 4.7 ATGAAAACGGTTTATA
Position: -37
Score: 4.2
Sequence: CTGGAAGCGCTTTTAT
Locus tag: BPUM_2121
BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuB
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3921 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02564 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05810 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1859 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2760 -62 4.8 TTGTAACCGTTTTCTT
Position: -76
Score: 4.6
Sequence: ATGTAAATGTTTACAT
Locus tag: BPUM_2208
BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: -103
Score: 4.4
Sequence: TTTTAACCGTTTTCAT
Locus tag: BPUM_2209
BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: -40
Score: 4.8
Sequence: ATGAAAACGGTTAAAA
Locus tag: BPUM_2210
BPUM_2210 -40 4.8 ATGAAAACGGTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgW
Ortholog function: Alkaliphily related protein
Bacillus amyloliquefaciens FZB42 RBAM_023130 -61 4.8 ATGAAAACGGTTAAAA
Bacillus clausii KSM-K16 ABC2498 -57 4.5 ATGAAAACGGGTACAA
Bacillus halodurans C-125 BH2819 -168 4.5 AAGAAAACGTTTAAAA
Bacillus licheniformis DSM 13 BLi02654 -66 4.8 ATGAAAACGGTTAAAA
Bacillus pumilus SAFR-032 BPUM_2210 -40 4.8 ATGAAAACGGTTAAAA
Bacillus subtilis subsp. subtilis str. 168 BSU24800 -88 4.8 ATGAAAACGCTATCGA
Position: -49
Score: 4.2
Sequence: CTGAAAGCGCATTTAT
Position: 12
Score: 4.4
Sequence: ATGAAAACGTTATATG
Locus tag: BPUM_2216
BPUM_2216 -49 4.2 CTGAAAGCGCATTTAT
12 4.4 ATGAAAACGTTATATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgQ
Ortholog function: Hypothetical Cytosolic Protein
Anoxybacillus flavithermus WK1 Aflv_0894 -23 4.5 TTGAAAACGCTTATAC
Bacillus cereus ATCC 14579 BC4261 -57 4.3 ATGTGAACGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2216 -49 4.2 CTGAAAGCGCATTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU24860 -79 4.7 TTGTCAGCGTTTTCTT
Position: -330
Score: 4.8
Sequence: ATGAAAACGCTTTTTT
Locus tag: BPUM_2252
BPUM_2252 -330 4.8 ATGAAAACGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cccA
Ortholog function: Membrane-attached cytochrome c550
Bacillus amyloliquefaciens FZB42 RBAM_023500 -190 5 TTGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2252 -330 4.8 ATGAAAACGCTTTTTT
Bacillus subtilis subsp. subtilis str. 168 BSU25190 -188 5 TTGTAAGCGTATACAA
Position: -35
Score: 4.7
Sequence: ATGAAAGCGGTTAATT
Locus tag: BPUM_2326
BPUM_2326 -35 4.7 ATGAAAGCGGTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Bacillus licheniformis DSM 13 BLi02065 -178 5.2 TTGAAAGCGTTTAAAA
-93 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_2326 -35 4.7 ATGAAAGCGGTTAATT
Oceanobacillus iheyensis HTE831 OB2796 -88 5 ATGAAAGCGTTTTATA
Position: -35
Score: 5
Sequence: TTGAAACCGCTATCAA
Locus tag: BPUM_2329
BPUM_2329 -35 5 TTGAAACCGCTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Bacillus licheniformis DSM 13 BLi02062 -55 4.1 AGGAAAATGCTTTCTT
-29 4.5 ATGAAATCGCTATCAG
Bacillus pumilus SAFR-032 BPUM_2329 -35 5 TTGAAACCGCTATCAA
Oceanobacillus iheyensis HTE831 OB2799 -59 4.3 AAGAAAGCGTATCCTT
-29 4.4 ATGTAGGCGTTTTCAG
Position: -254
Score: 4.9
Sequence: TTGATAGCGGTTTCAA
Locus tag: BPUM_2330
BPUM_2330 -254 4.9 TTGATAGCGGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araR
Ortholog function: Transcriptional repressor of arabinoside utilization operon, GntR family
Bacillus amyloliquefaciens FZB42 RBAM_031330 -229 4.9 ATAAAAACGCTTACAA
-59 4.6 ATGAAAGGGCTTACTA
Bacillus licheniformis DSM 13 BLi02061 -265 4 CTGATAGCGATTTCAT
-239 4 AAGAAAGCATTTTCCT
Bacillus pumilus SAFR-032 BPUM_2330 -254 4.9 TTGATAGCGGTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU33970 -115 4.4 AGTAAAGCGTTTTCAT
Oceanobacillus iheyensis HTE831 OB2800 -289 4.1 CTGAAAACGCCTACAT
Position: -200
Score: 4.6
Sequence: GTGTAAGCGTATACAT
Locus tag: BPUM_2473
BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -139
Score: 4.2
Sequence: ATGTACGCGGTTTCTT
Locus tag: BPUM_2503
BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: 0
Score: 4.6
Sequence: ATGAATGCGGTTACAA
Locus tag: BPUM_2525
BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: Carbon starvation-induced membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_025770 0 4.4 ATGAATGCGATTACAA
Bacillus licheniformis DSM 13 BLi03019 -62 4.3 ATGATTGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU28710 0 4.6 ATGAATGCGGTTACAA
Position: -68
Score: 4.5
Sequence: TTGTAAACGCTTCATT
Locus tag: BPUM_2534
BPUM_2534 -68 4.5 TTGTAAACGCTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lrgA
Ortholog function: Antiholin-like protein LrgA
Bacillus cereus ATCC 14579 BC5439 -59 5 ATGTAAACGCTTACTT
Bacillus licheniformis DSM 13 BLi03037 -68 4.8 TTGAAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_2534 -68 4.5 TTGTAAACGCTTCATT
Bacillus subtilis subsp. subtilis str. 168 BSU28910 -68 4.9 TTGTAAGCGCTTTATA
Position: -111
Score: 4.6
Sequence: ATGTAAGCATTTTCTT
Position: -69
Score: 4.5
Sequence: TGGATAGCGCTTTCAA
Locus tag: BPUM_2556
BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -180
Score: 4.7
Sequence: ATGTAAGCGGTAACAG
Locus tag: BPUM_2579
BPUM_2579 -180 4.7 ATGTAAGCGGTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Anoxybacillus flavithermus WK1 Aflv_0480 -133 4.4 AAGAAAACGTTTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_026400 -146 4.7 TTGTAAGCGGTACCAA
Bacillus licheniformis DSM 13 BLi03086 -168 4.9 GTGAAAGCGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2579 -180 4.7 ATGTAAGCGGTAACAG
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -156 5.2 TTGTAAGCGTTATCAA
Position: -30
Score: 4.7
Sequence: TTGTAAACGTATGCAA
Locus tag: BPUM_2616
BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -74
Score: 4.4
Sequence: GTGAAACCGTTTTAAT
Locus tag: BPUM_2617
BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Anoxybacillus flavithermus WK1 Aflv_0461 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03120 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -75 4.9 TTGAAAACGCTTTATA
Position: -28
Score: 5
Sequence: ATGATAACGCTTTCAA
Locus tag: BPUM_2666
BPUM_2666 -28 5 ATGATAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcP
Ortholog function: ABC superfamily ATP binding cassette transporter, membrane protein
Bacillus clausii KSM-K16 ABC1146 76 4.7 ATGAAAGCGCTTCCTC
Bacillus halodurans C-125 BH0481 -66 4.9 ATGATAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi03169 -97 5.1 TTGACAGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2666 -28 5 ATGATAACGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU30170 -43 4.9 ATGATAACGCTTACAA
Position: -59
Score: 5.1
Sequence: ATGAAAGCGTTTAAAT
Locus tag: BPUM_2978
BPUM_2978 -59 5.1 ATGAAAGCGTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dapA
Ortholog function: Dihydrodipicolinate synthase family
Bacillus pumilus SAFR-032 BPUM_2978 -59 5.1 ATGAAAGCGTTTAAAT
Position: -52
Score: 4.9
Sequence: ATGAAAGCGGTTTTAT
Locus tag: BPUM_2986
BPUM_2986 -52 4.9 ATGAAAGCGGTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: Transcriptional repressor of hexuronate utilization operon, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_012400 -123 4.2 ATGTTAACGGATACAA
-38 4.5 TTGTTAACGTTAACAT
Bacillus licheniformis DSM 13 BLi03514 -75 4 ATGTTAACGTTCACAT
-43 4.5 TTGTTAACGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2986 -52 4.9 ATGAAAGCGGTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU12370 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -73
Score: 4.8
Sequence: TTGTAAACGATTACAA
Locus tag: BPUM_2987
BPUM_2987 -73 4.8 TTGTAAACGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Bacillus amyloliquefaciens FZB42 RBAM_012380 -123 4.2 ATGTTAACGGATACAA
-38 4.5 TTGTTAACGTTAACAT
Bacillus licheniformis DSM 13 BLi03516 -75 4 ATGTTAACGTTCACAT
-43 4.5 TTGTTAACGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2987 -73 4.8 TTGTAAACGATTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU12300 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -37
Score: 4.9
Sequence: TTGATAACGCTTACAA
Locus tag: BPUM_3238
BPUM_3238 -37 4.9 TTGATAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3845
Ortholog function: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
Bacillus halodurans C-125 BH3845 -81 4.9 ATGAAAGCGATTTCTT
24 4.6 ATGATAGCGCTTTCTG
Bacillus pumilus SAFR-032 BPUM_3238 -37 4.9 TTGATAACGCTTACAA
Geobacillus kaustophilus HTA426 GK3207 -41 4.6 TTGAAAGGGGTTTCAA
Position: -32
Score: 4.5
Sequence: TTGAAACCGGTACCAA
Locus tag: BPUM_3244
BPUM_3244 -32 4.5 TTGAAACCGGTACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Bacillus licheniformis DSM 13 BLi03827 -36 4.5 TTGAAACCGGTACCAT
Bacillus pumilus SAFR-032 BPUM_3244 -32 4.5 TTGAAACCGGTACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU22110 -41 4.7 TTGAAATCGGTTTCAA
Position: -156
Score: 4.8
Sequence: TTGAAATCGCTTTCTT
Position: -53
Score: 4.2
Sequence: TTGAAATCGGTTTCGA
Locus tag: BPUM_3245
BPUM_3245 -156 4.8 TTGAAATCGCTTTCTT
-53 4.2 TTGAAATCGGTTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: Transcriptional regulator of pectin utilization, LacI family
Bacillus licheniformis DSM 13 BLi03828 -41 4.7 TTGAAATCGGTTTCAA
Bacillus pumilus SAFR-032 BPUM_3245 -53 4.2 TTGAAATCGGTTTCGA
Bacillus subtilis subsp. subtilis str. 168 BSU22120 -41 4.7 TTGAAATCGGTTTCAA
Position: -122
Score: 4.7
Sequence: AAGAAAGCGATTTCAA
Locus tag: BPUM_3246
BPUM_3246 -122 4.7 AAGAAAGCGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Bacillus clausii KSM-K16 ABC0994 33 4.5 TTTAAAACGTATACAA
Bacillus halodurans C-125 BH2166 -48 5.1 TTGAAAGCGTTATCTT
Bacillus licheniformis DSM 13 BLi03829 -75 4.7 TTGAAACCGTTACCAA
Bacillus pumilus SAFR-032 BPUM_3246 -122 4.7 AAGAAAGCGATTTCAA
-64 4.3 TTGAAACCGATACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU22130 -65 4.7 TTGAAACCGTTACCAA
Position: -38
Score: 4.2
Sequence: GTGTAAACGGTTACAC
Locus tag: BPUM_3263
BPUM_3263 -38 4.2 GTGTAAACGGTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_033080 -33 5 ATGTAAACGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3263 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35910 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2577 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: 0
Score: 4.4
Sequence: ATGAAACCACTTACTT
Locus tag: BPUM_3267
BPUM_3267 0 4.4 ATGAAACCACTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsC
Ortholog function: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Anoxybacillus flavithermus WK1 Aflv_2669 -34 4.5 ATGTAACCGGTTACAG
Bacillus amyloliquefaciens FZB42 RBAM_033120 -33 5 ATGTAAACGGTTACAT
Bacillus cereus ATCC 14579 BC0663 -35 4.4 CTGTAAACGGTTACAT
Bacillus clausii KSM-K16 ABC3545 -33 4.1 CTGTAACCGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3267 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35950 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2573 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: -32
Score: 4.9
Sequence: ATGTAAGCGGTAACAA
Locus tag: BPUM_3373
BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
Position: -100
Score: 4.9
Sequence: TTGTAAGCGCTATAAT
Locus tag: BPUM_3415
BPUM_3415 -100 4.9 TTGTAAGCGCTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus amyloliquefaciens FZB42 RBAM_034850 -99 5 TTGAAAGCGCTATAAT
Bacillus clausii KSM-K16 ABC3910 -143 4.3 TTGAAAACCCTTTCCT
-124 4.5 ATGGAAGCGTAATCTA
Bacillus halodurans C-125 BH3823 -194 4.8 TTGGAAACGCTTTAAA
Bacillus licheniformis DSM 13 BLi03997 -104 4.3 GTGTAAACGTTATAAT
Bacillus pumilus SAFR-032 BPUM_3415 -100 4.9 TTGTAAGCGCTATAAT
Bacillus subtilis subsp. subtilis str. 168 BSU37660 -100 5 ATGAAAGCGCTATAAT
-38 4 AAGAAAGCGTTTTTGT
Position: -156
Score: 4.5
Sequence: ATTATAGCGCTTACAA
Locus tag: BPUM_3416
BPUM_3416 -156 4.5 ATTATAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywfI
Ortholog function: Predicted heme peroxidase involved in anaerobic stress response
Bacillus amyloliquefaciens FZB42 RBAM_034860 -178 4.5 ATTATAGCGCTTTCAA
Bacillus halodurans C-125 BH3825 -114 4.7 TTTAAAGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_3416 -156 4.5 ATTATAGCGCTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU37670 -200 4.5 ATTATAGCGCTTTCAT
Position: -145
Score: 5.1
Sequence: ATGAAAGCGTAATCAA
Locus tag: BPUM_3452
BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sacP
Ortholog function: PTS sucrose-specific enzyme IIBC component
Anoxybacillus flavithermus WK1 Aflv_2785 -147 4.7 ATGAAAGCGGATAAAA
Bacillus amyloliquefaciens FZB42 RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Bacillus cereus ATCC 14579 BC0775 -158 4.7 AAGAAAGCGTTGACAA
Bacillus halodurans C-125 BH1856 -170 4.3 GAGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04017 -154 4.9 ATGAAAGCGTATTAAA
Bacillus pumilus SAFR-032 BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38050 -151 5 ATGAAAGCGTATTCTT
Position: -71
Score: 5.3
Sequence: ATGAAAGCGGTTTCAT
Locus tag: BPUM_3506
BPUM_3506 -71 5.3 ATGAAAGCGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licB
Ortholog function: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035790 -75 5.1 ATGAAAGCGATTTCAT
Bacillus licheniformis DSM 13 BLi04089 -74 5.2 ATGAAAACGGTTTCAT
Bacillus pumilus SAFR-032 BPUM_3506 -71 5.3 ATGAAAGCGGTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU38590 -77 5.1 ATGAAAGCGATTTCAT
Position: -320
Score: 4.6
Sequence: AAGAAAGCGTTGACAT
Locus tag: BPUM_3566
BPUM_3566 -320 4.6 AAGAAAGCGTTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglP
Ortholog function: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_036360 -257 4.5 ATGTAAGCGTTGACAC
Bacillus licheniformis DSM 13 BLi04215 -286 5.1 ATGAAAGCGTTGACAT
Bacillus pumilus SAFR-032 BPUM_3566 -320 4.6 AAGAAAGCGTTGACAT
Bacillus subtilis subsp. subtilis str. 168 BSU39270 -253 5.1 ATGAAAGCGTTGACAT
Position: -31
Score: 4.5
Sequence: ATGTAAACGAATTCAT
Locus tag: BPUM_3586
BPUM_3586 -31 4.5 ATGTAAACGAATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Bacillus amyloliquefaciens FZB42 RBAM_036470 -33 4.6 TTGTAAGCGAATACAA
Bacillus licheniformis DSM 13 BLi04228 -34 4.6 ATGTAAGCGAATACAT
Bacillus pumilus SAFR-032 BPUM_3586 -31 4.5 ATGTAAACGAATTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU39410 -33 4.6 TTGTAAGCGAATACAA
Position: -51
Score: 4.8
Sequence: AAGAAAGCGTTTTCTT
Locus tag: BPUM_3613
BPUM_3613 -51 4.8 AAGAAAGCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycB
Ortholog function: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
Bacillus clausii KSM-K16 ABC3520 -37 4.6 AAGAAAGCGGTTACTT
Bacillus halodurans C-125 BH2019 -55 4.4 TATAAAACGCTTTCAT
Bacillus pumilus SAFR-032 BPUM_3613 -51 4.8 AAGAAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU34160 -39 5 TTTAAAGCGCTTTCAT
Position: -120
Score: 4.6
Sequence: ATGAAAGCGGTTGCCT
Locus tag: BPUM_3618
BPUM_3618 -120 4.6 ATGAAAGCGGTTGCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citMII
Ortholog function: Magnesium citrate secondary transporter
Bacillus clausii KSM-K16 ABC0100 -76 4.8 TTGGAAACGGTTACAA
Bacillus halodurans C-125 BH0745 -56 5 TTGAAAGCGCTTAATA
Bacillus pumilus SAFR-032 BPUM_3618 -120 4.6 ATGAAAGCGGTTGCCT
-32 4.5 ATGTAAACGGTTTATT
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