Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NikR regulog to Desulfovibrio desulfuricans G20

Reference regulog properties
Source regulog: NikR - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio desulfuricans G20
Orthologous TF(s) Dde_2956
Regulated genes 3
Built upon 16 sites [see more]
Predicted regulatory interactions in Desulfovibrio desulfuricans G20
Locus tag Position Score Sequence
Position: -220
Score: 5.8
Sequence: GTGCTAT-(14)-GTGCCAC
Position: 4
Score: 5.7
Sequence: GTCTCAG-(13)-GTAAAAC
Locus tag: Dde_2134
Dde_2134 -220 5.8 GTGCTAT-(14)-GTGCCAC
4 5.7 GTCTCAG-(13)-GTAAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hysB
Ortholog function: [Ni/Fe] hydrogenase, group 1, small subunit
Desulfovibrio vulgaris str. Miyazaki F DvMF_0274 -244 6.8 GTAACAC-(13)-ATAACAC
Desulfovibrio desulfuricans G20 Dde_2134 -65 5.7 GTCTCAG-(13)-GTAAAAC
Desulfomicrobium baculatum DSM 4028 Dbac_1970 -216 6.3 GTGTTAT-(13)-GTAACAT
Position: -82
Score: 7.4
Sequence: GTATTAC-(13)-GTAACAC
Locus tag: Dde_2281
Dde_2281 -82 7.4 GTATTAC-(13)-GTAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hydA2
Ortholog function: Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)
Desulfovibrio desulfuricans G20 Dde_2281 -122 5.2 GTGGTAG-(13)-ATAGCAC
-82 7.4 GTATTAC-(13)-GTAACAC