Propagation of NikR regulog to Desulfovibrio desulfuricans G20
| Source regulog: | NikR - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/delta |
| Propagated regulon: | |
| Target genome | Desulfovibrio desulfuricans G20 |
| Orthologous TF(s) | Dde_2956 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -220
Score: 5.8 Sequence: GTGCTAT-(14)-GTGCCAC
Position: 4
Score: 5.7 Sequence: GTCTCAG-(13)-GTAAAAC
Locus tag: Dde_2134
|
||||
| Dde_2134 | -220 | 5.8 | GTGCTAT-(14)-GTGCCAC | |
| 4 | 5.7 | GTCTCAG-(13)-GTAAAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hysB | ||||
| Ortholog function: [Ni/Fe] hydrogenase, group 1, small subunit | ||||
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0274 | -244 | 6.8 | GTAACAC-(13)-ATAACAC |
| Desulfovibrio desulfuricans G20 | Dde_2134 | -65 | 5.7 | GTCTCAG-(13)-GTAAAAC |
| Desulfomicrobium baculatum DSM 4028 | Dbac_1970 | -216 | 6.3 | GTGTTAT-(13)-GTAACAT |
|
Position: -82
Score: 7.4 Sequence: GTATTAC-(13)-GTAACAC
Locus tag: Dde_2281
|
||||
| Dde_2281 | -82 | 7.4 | GTATTAC-(13)-GTAACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hydA2 | ||||
| Ortholog function: Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2) | ||||
| Desulfovibrio desulfuricans G20 | Dde_2281 | -122 | 5.2 | GTGGTAG-(13)-ATAGCAC |
| -82 | 7.4 | GTATTAC-(13)-GTAACAC | ||