Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NikR regulog to Desulfomicrobium baculatum DSM 4028

Reference regulog properties
Source regulog: NikR - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfomicrobium baculatum DSM 4028
Orthologous TF(s) Dbac_3231
Regulated genes 1
Built upon 16 sites [see more]
Predicted regulatory interactions in Desulfomicrobium baculatum DSM 4028
Locus tag Position Score Sequence
Position: -216
Score: 6.3
Sequence: GTGTTAT-(13)-GTAACAT
Position: 4
Score: 5.7
Sequence: GTCTTAG-(13)-GTAAAAC
Locus tag: Dbac_1970
Dbac_1970 -216 6.3 GTGTTAT-(13)-GTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hysB
Ortholog function: [Ni/Fe] hydrogenase, group 1, small subunit
Desulfovibrio vulgaris str. Miyazaki F DvMF_0274 -244 6.8 GTAACAC-(13)-ATAACAC
Desulfovibrio desulfuricans G20 Dde_2134 -65 5.7 GTCTCAG-(13)-GTAAAAC
Desulfomicrobium baculatum DSM 4028 Dbac_1970 -216 6.3 GTGTTAT-(13)-GTAACAT