Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of DVU1063 regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog: DVU1063 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Motility
Effector:
Phylum: Proteobacteria/Delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. DP4
Orthologous TF(s) Dvul_1931
Regulated genes 7
Built upon 86 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. DP4
Locus tag Position Score Sequence
Position: -108
Score: 4.3
Sequence: GGCAACACTTGCC
Position: 1
Score: 4.4
Sequence: TGAAAATTCTTCC
Locus tag: Dvul_1634
Dvul_1634 -108 4.3 GGCAACACTTGCC
1 4.4 TGAAAATTCTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliK
Ortholog function: Flagellar hook-length control protein FliK
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1259 -107 4.5 GGCAATACTTGCC
1 4.2 TGCAGATTATTCC
Desulfovibrio vulgaris Hildenborough DVU1445 -108 4.3 GGCAACACTTGCC
1 4.4 TGAAAATTCTTCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_0248 1 4.3 TGCATATTTTTCC
Lawsonia intracellularis PHE/MN1-00 LI0568 1 4.4 TGCAGATTTTTCC
Position: -193
Score: 4.3
Sequence: TGCAAAAATTTCC
Locus tag: Dvul_1638
Dvul_1638 -193 4.3 TGCAAAAATTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: flaB1
Ortholog function: Flagellin protein FlaA
Desulfovibrio desulfuricans G20 Dde_1709 -193 4.1 TGAAAAAAATTCC
-138 4 GGAAAAAATGTCC
Desulfovibrio salexigens DSM 2638 Desal_3004 -281 4.4 GGCAGTTAATGCC
-155 4 GGAAAAAATTGAC
Desulfovibrio vulgaris Hildenborough DVU1441 -193 4.3 TGCAAAAATTTCC
-119 3.8 GGCAAGTGGTGCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_0244 -194 4.1 TGCAAAAAATTCC
-140 4.2 GGAAAATTTTGGC
Position: -118
Score: 4.7
Sequence: GGCAGTTTTTTCC
Locus tag: Dvul_1962
Dvul_1962 -118 4.7 GGCAGTTTTTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU1032
Ortholog function: Conserved hypothetical protein
Desulfomicrobium baculatum DSM 4028 Dbac_2476 -112 4.1 GGCAAACCTTTCC
Desulfovibrio desulfuricans G20 Dde_1455 -119 4 GGTATTTTTTTCC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0763 -125 4.9 GGAAAAATTTTCC
Desulfovibrio magneticus RS-1 DMR_39260 -118 4.6 GGCAAAAAATGCC
Desulfovibrio salexigens DSM 2638 Desal_0181 -123 4.7 GGCAGTTTTTTCC
Desulfovibrio vulgaris Hildenborough DVU1032 -118 4.7 GGCAGTTTTTTCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_0905 -126 4.5 GGCAGCTTTTTCC
Lawsonia intracellularis PHE/MN1-00 LI0887 -121 4.6 GGAATTTTTTGCC
Position: -29
Score: 4.7
Sequence: GGCAAAAACTTCC
Locus tag: Dvul_2119
Dvul_2119 -29 4.7 GGCAAAAACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fliD
Ortholog function: Flagellar hook-associated protein FliD
Desulfovibrio desulfuricans G20 Dde_1120 -170 3.8 GTAAAGTTCTGCC
-26 4.6 GGAAAAAAATGCC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0530 -243 3.8 TGCAAAAATTTCA
-101 4.6 GGCAAAAAATGCC
Desulfovibrio magneticus RS-1 DMR_03980 -27 4.6 GGAATTTTTTGCC
Desulfovibrio salexigens DSM 2638 Desal_1249 -24 4.6 GGAAAAAAATTCC
Desulfovibrio vulgaris Hildenborough DVU0863 -29 4.7 GGCAAAAACTTCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2912 -29 4.7 GGAAATTTCTTCC
Position: -255
Score: 4.2
Sequence: GGAAGGAGTTGCC
Locus tag: Dvul_2664
Dvul_2664 -255 4.2 GGAAGGAGTTGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVU0318
Ortholog function: TPR domain protein
Desulfovibrio vulgaris Hildenborough DVU0318 -255 4.2 GGAAGGAGTTGCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2283 -410 4.6 GGCAGGATTTGCC
Position: -41
Score: 4
Sequence: GGCAACGTCTGCC
Locus tag: Dvul_2665
Dvul_2665 -41 4 GGCAACGTCTGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgB
Ortholog function: Flagellar basal-body rod protein FlgB
Desulfohalobium retbaense DSM 5692 Dret_0653 -273 3.9 GGAAAGTCGTGCC
Desulfovibrio desulfuricans G20 Dde_0356 -269 4.3 GGAACTTTTTTCC
Desulfovibrio magneticus RS-1 DMR_45020 -118 4.6 GGCAAAAAATGCC
Desulfovibrio salexigens DSM 2638 Desal_1156 -275 3.9 GGCATTTTTTTCG
-26 4.1 GGAATTTTTTGCA
Desulfovibrio vulgaris Hildenborough DVU0316 -41 4 GGCAACGTCTGCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2284 -262 4.6 GGCAAATCCTGCC
Position: -27
Score: 4.7
Sequence: GGAATATTCTGCC
Locus tag: Dvul_2674
Dvul_2674 -27 4.7 GGAATATTCTGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: flgE
Ortholog function: Flagellar hook protein FlgE
Desulfomicrobium baculatum DSM 4028 Dbac_1614 -50 4.9 GGAAAATTCTGCC
Desulfovibrio desulfuricans G20 Dde_0298 -199 4.6 GGCAACTTTTTCC
-55 4.8 GGCATATTTTGCC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2091 -154 4.2 GGAATATTCTGCA
-43 4.5 GGAATGTTTTTCC
Desulfovibrio salexigens DSM 2638 Desal_2938 -180 3.8 GGACTTTTTTTCC
Desulfovibrio vulgaris Hildenborough DVU0307 -27 4.7 GGAATATTCTGCC
Desulfovibrio vulgaris str. Miyazaki F DvMF_1808 -206 4.5 GGCAGGTTCTGCC
-96 4.8 GGAAGAATCTTCC
Lawsonia intracellularis PHE/MN1-00 LI0348 -88 4 GGCAAAAATTTCT
-42 3.9 GGTACATTTTGCC