Propagation of Rex regulog to Desulfovibrio vulgaris str. DP4
| Source regulog: | Rex - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Proteobacteria/delta |
| Propagated regulon: | |
| Target genome | Desulfovibrio vulgaris str. DP4 |
| Orthologous TF(s) | Dvul_2068 |
| Regulated genes | 12 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -127
Score: 4 Sequence: CTTGTGAAATAATGTTCTTT
Locus tag: Dvul_0523
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| Dvul_0523 | -127 | 4 | CTTGTGAAATAATGTTCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhcA | ||||
| Ortholog function: Decaheme cytochrome c associated with Rnf complex | ||||
| Desulfovibrio desulfuricans G20 | Dde_0580 | -226 | 4.4 | TATGTGAAAAATTTAATTAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1237 | -214 | 4.6 | ACTGTGAAAAATATCACCAA |
| Desulfovibrio vulgaris Hildenborough | DVU2791 | -127 | 4 | CTTGTGAAATAATGTTCTTT |
|
Position: -116
Score: 4.4 Sequence: ATTGGGAATCGATTCACAAA
Locus tag: Dvul_0969
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| Dvul_0969 | -116 | 4.4 | ATTGGGAATCGATTCACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cooM | ||||
| Ortholog function: Carbon monoxide-induced hydrogenase membrane protein CooM | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1880 | -110 | 4.3 | TTTACTATTTTTTTCACGAT |
| Desulfovibrio vulgaris Hildenborough | DVU2286 | -116 | 4.4 | ATTGGGAATCGATTCACAAA |
|
Position: -12
Score: 5 Sequence: CTCGTGAAATTAATGACAAG
Locus tag: Dvul_1235
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| Dvul_1235 | -12 | 5 | CTCGTGAAATTAATGACAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adk | ||||
| Ortholog function: Adenylate kinase (EC 2.7.4.3) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1683 | -29 | 4.8 | TTTGTGAAATTTTTCTTCAG |
| Desulfomicrobium baculatum DSM 4028 | Dbac_0784 | -31 | 5.2 | TTTGTGAAATTTTTTACAGG |
| Desulfovibrio desulfuricans G20 | Dde_2028 | -12 | 5.1 | TTCGTGAAATAAATGACAAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1956 | -51 | 4.6 | TGTGTTCTTTTTTGCACAAT |
| Desulfovibrio magneticus RS-1 | DMR_16390 | -32 | 4.3 | ATTGTGAAAAATCAAACATG |
| Desulfovibrio piger ATCC 29098 | DESPIG_01460 | -55 | 4.7 | TCTGTTCTTTTTTGCACAAA |
| Desulfovibrio salexigens DSM 2638 | Desal_1973 | -39 | 5.1 | TTTGTGAAATTTGTTACTAA |
| Desulfovibrio vulgaris Hildenborough | DVU1932 | -30 | 5 | CTCGTGAAATTAATGACAAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0293 | -30 | 5.1 | CTCGTGAAAATTATTACAAG |
|
Position: -288
Score: 4.1 Sequence: CGAGCTATATATTTCACAAA
Locus tag: Dvul_1249
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| Dvul_1249 | -288 | 4.1 | CGAGCTATATATTTCACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hysB | ||||
| Ortholog function: periplasmic [NiFeSe] hydrogenase, small subunit | ||||
| Desulfovibrio desulfuricans G20 | Dde_2134 | -48 | 4.2 | TTTGTAAAACTGTGCACAGG |
| Desulfovibrio salexigens DSM 2638 | Desal_2050 | 21 | 4.7 | TTCGTGAAAATGTGCACAGG |
| Desulfovibrio vulgaris Hildenborough | DVU1917 | -288 | 4.1 | CGAGCTATATATTTCACAAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0274 | 21 | 4.2 | TTCGTCAAATTGTGCACAGG |
|
Position: -79
Score: 5.2 Sequence: ATTGTGCTATTTGGCACAAA
Locus tag: Dvul_1498
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| Dvul_1498 | -79 | 5.2 | ATTGTGCTATTTGGCACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppaC | ||||
| Ortholog function: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1594 | -84 | 5.3 | TTTGTGCTATTTGGCACAAA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_0143 | -58 | 5.3 | ATTGTGATATTTAGCACAAT |
| Desulfovibrio desulfuricans G20 | Dde_1778 | -78 | 5.2 | ATTGTGCTATTTGGCACAAA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0968 | -70 | 4.4 | TTTGTGCTAAAGAGTACAAA |
| Desulfovibrio magneticus RS-1 | DMR_25800 | -79 | 5.3 | ATTGGGATATTATTCACAAG |
| Desulfovibrio piger ATCC 29098 | DESPIG_01072 | -101 | 4.6 | CTTGTGCTAAAGGTAACAAG |
| Desulfovibrio salexigens DSM 2638 | Desal_2248 | -57 | 4.5 | ATTGTGATAGAAGACACAAG |
| Desulfovibrio vulgaris Hildenborough | DVU1636 | -79 | 5.2 | ATTGTGCTATTTGGCACAAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0420 | -92 | 5.3 | TTTGTGCTATTTGGCACAAA |
|
Position: -150
Score: 5.7 Sequence: TTTGTAAATTTTTTCACAAG
Locus tag: Dvul_1771
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| Dvul_1771 | -150 | 5.7 | TTTGTAAATTTTTTCACAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sat | ||||
| Ortholog function: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1968 | -273 | 4.8 | CTTGTGCAATAGCGCACAAG |
| -130 | 5.1 | ATTGATAAAAAAATCACAAA | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3196 | -114 | 4.8 | GTTGATAAAAAAATCACAAA |
| -43 | 4.9 | TTTGTGAAAATAAAAACAAA | ||
| Desulfovibrio desulfuricans G20 | Dde_2265 | -149 | 5.5 | TTTGCTAAAAATTTCACAAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0454 | -108 | 5.4 | TTTGTTAGATTATTCACAAG |
| Desulfovibrio magneticus RS-1 | DMR_39470 | -140 | 4.2 | TTTGACACATTTTTCACTTG |
| Desulfovibrio piger ATCC 29098 | DESPIG_02241 | -82 | 5.4 | TTTGTTAGATTATTCACAAG |
| Desulfovibrio salexigens DSM 2638 | Desal_0228 | -242 | 4.6 | CTTGACATTTCTTTCACAAA |
| Desulfovibrio vulgaris Hildenborough | DVU1295 | -150 | 5.7 | TTTGTAAATTTTTTCACAAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0074 | -164 | 5.4 | TATGTAAAATATTTCACAAG |
|
Position: -143
Score: 4.1 Sequence: TATGTGAAAAAAATCATTTT
Locus tag: Dvul_1774
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| Dvul_1774 | -143 | 4.1 | TATGTGAAAAAAATCATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Dret_0234 | ||||
| Ortholog function: hypothetical protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0234 | -70 | 3.8 | AATGTGAAATTCGGCACACA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_0269 | -134 | 4.9 | CTTGTTTCATTTTTCACAAA |
| Desulfovibrio desulfuricans G20 | Dde_2270 | -167 | 4 | TATGTGAAAAAAATAATTAT |
| Desulfovibrio salexigens DSM 2638 | Desal_0187 | -118 | 3.9 | AGTGTGACAGAATTCACATT |
| Desulfovibrio vulgaris Hildenborough | DVU1291 | -40 | 4.1 | TATGTGAAAAAAATCATTTT |
|
Position: -65
Score: 4.2 Sequence: CTTGTGAACGATTGCACGAA
Locus tag: Dvul_2064
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| Dvul_2064 | -65 | 4.2 | CTTGTGAACGATTGCACGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI1 | ||||
| Ortholog function: ATP synthase protein I | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2089 | -11 | 4.6 | CTTGTGAATGAATGCACGAA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2797 | -56 | 5.1 | TTTGTGATTTATTGCACGAA |
| Desulfovibrio desulfuricans G20 | Dde_2698 | -151 | 4.8 | CTTGTGAAAAATTTCTAAAA |
| -68 | 4.1 | CTTGTGAAGGAATGCACGAA | ||
| Desulfovibrio magneticus RS-1 | DMR_42140 | -76 | 4.4 | CTTGTGAACTTGTGCACGAG |
| Desulfovibrio piger ATCC 29098 | DESPIG_02071 | -11 | 4.7 | ATTGTGATAATTTGTACATT |
| Desulfovibrio salexigens DSM 2638 | Desal_3727 | -74 | 4.1 | CTTGTGAAGGTTTGCGCAAA |
| Desulfovibrio vulgaris Hildenborough | DVU0920 | 61 | 4.2 | CTTGTGAACGATTGCACGAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1386 | -148 | 4.1 | GTGGGGAATTTTTTCACGAA |
| -76 | 4.3 | CTTGTGAACGTTTGCACGAA | ||
|
Position: -168
Score: 4.6 Sequence: ATTGTTAATTCCATCACAAG
Locus tag: Dvul_2137
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| Dvul_2137 | -168 | 4.6 | ATTGTTAATTCCATCACAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apsB | ||||
| Ortholog function: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1967 | -167 | 4.4 | CTTGCGCTAAATTTCACTTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3197 | -95 | 5.2 | TTTGATAAAAGATTCACAAG |
| Desulfovibrio desulfuricans G20 | Dde_1109 | -188 | 5.6 | TTTGTTAAATATCTCACAAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2130 | -140 | 4.4 | CTTGTTACTAATTGCGCAAG |
| Desulfovibrio magneticus RS-1 | DMR_05390 | -279 | 4.4 | CTTGTTAAACCGATCACAAG |
| Desulfovibrio piger ATCC 29098 | DESPIG_02774 | -142 | 4.4 | CTTGTTACTAAAAACACAAG |
| Desulfovibrio salexigens DSM 2638 | Desal_0229 | -146 | 4.7 | CTTGTTCTAAATTTCACTTT |
| Desulfovibrio vulgaris Hildenborough | DVU0846 | -168 | 4.6 | ATTGTTAATTCCATCACAAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2892 | -171 | 5.1 | ATTGTTAAATCAGTCACAAG |
|
Position: -38
Score: 5 Sequence: TTTGAGCTTTAATTCACAAC
Locus tag: Dvul_2190
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| Dvul_2190 | -38 | 5 | TTTGAGCTTTAATTCACAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpF1 | ||||
| Ortholog function: ATP synthase B' chain (EC 3.6.3.14) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2217 | -35 | 4.3 | TTTGAACCAAAATTCACATA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3361 | -36 | 4.9 | TTTGAACAAAAATTCACAAC |
| Desulfovibrio desulfuricans G20 | Dde_0990 | -121 | 5 | TTCAGGAAATTTTTCACAAG |
| -38 | 4.9 | TTTGAGCTTAAATTCACAAC | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2183 | -113 | 5 | CTTGCGAAATTTGTCACCAA |
| Desulfovibrio magneticus RS-1 | DMR_04760 | -163 | 4.6 | TTCGGTCAATTCTTCACAAA |
| -36 | 5.1 | TTTGCAAAAATTTTCACAAC | ||
| Desulfovibrio piger ATCC 29098 | DESPIG_02016 | -99 | 5 | TTTGCGAATTTTGTCACCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_3459 | -150 | 4.5 | TTAGTTAAAAAAATAACAAG |
| -36 | 4.8 | TTTGGACAAAAATTCACAAC | ||
| Desulfovibrio vulgaris Hildenborough | DVU0780 | -59 | 5 | TTTGAGCTTTAATTCACAAC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2826 | -38 | 4.9 | TTTGAGCTTAAATTCACAAC |
|
Position: -107
Score: 5.1 Sequence: TTCGTGAAATATTTCACCTT
Locus tag: Dvul_2268
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| Dvul_2268 | -107 | 5.1 | TTCGTGAAATATTTCACCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: qrcA | ||||
| Ortholog function: cytochrome c class III family protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0270 | -176 | 4.8 | ATCGTGAAATTTTTCATGAG |
| -102 | 4.7 | CTCGTGAAATTGTGCACAGG | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3390 | -116 | 4.5 | ATCGTGATTTTTTTCATTAT |
| Desulfovibrio desulfuricans G20 | Dde_2932 | -110 | 5 | TTCGTGAATTTTTTCACCTT |
| Desulfovibrio magneticus RS-1 | DMR_18010 | -217 | 5 | TTCGTGAATTTTTTCATTAG |
| Desulfovibrio salexigens DSM 2638 | Desal_1042 | -112 | 4.8 | TTTGTGAAAAGTTTCATATT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2690 | -112 | 5.1 | TTCGTGAAATATTTCACCTT |
|
Position: -155
Score: 4.5 Sequence: TTTGTCCAAAAAATCACGAG
Locus tag: Dvul_2532
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| Dvul_2532 | -155 | 4.5 | TTTGTCCAAAAAATCACGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsrA | ||||
| Ortholog function: Sulfite reductase alpha subunit (EC 1.8.99.1) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0244 | -109 | 4.1 | GTTGTACGAAAAATCACAAT |
| Desulfovibrio desulfuricans G20 | Dde_0526 | -153 | 4.2 | TTTGTCCAAAAAATCACGTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0921 | -209 | 4 | ATTTTTAAATATAAAACAAA |
| Desulfovibrio magneticus RS-1 | DMR_03600 | -166 | 4.1 | ATTGTTCAAAACTTCACGTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0787 | -177 | 4.2 | GTTGTGTTTTTTTTCACTTA |
| Desulfovibrio vulgaris Hildenborough | DVU0402 | -155 | 4.5 | TTTGTCCAAAAAATCACGAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1553 | -151 | 4.5 | TTTGTCCAAAAAATCACGAG |