Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog: Rex - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. DP4
Orthologous TF(s) Dvul_2068
Regulated genes 12
Built upon 107 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. DP4
Locus tag Position Score Sequence
Position: -127
Score: 4
Sequence: CTTGTGAAATAATGTTCTTT
Locus tag: Dvul_0523
Dvul_0523 -127 4 CTTGTGAAATAATGTTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhcA
Ortholog function: Decaheme cytochrome c associated with Rnf complex
Desulfovibrio desulfuricans G20 Dde_0580 -226 4.4 TATGTGAAAAATTTAATTAG
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1237 -214 4.6 ACTGTGAAAAATATCACCAA
Desulfovibrio vulgaris Hildenborough DVU2791 -127 4 CTTGTGAAATAATGTTCTTT
Position: -116
Score: 4.4
Sequence: ATTGGGAATCGATTCACAAA
Locus tag: Dvul_0969
Dvul_0969 -116 4.4 ATTGGGAATCGATTCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cooM
Ortholog function: Carbon monoxide-induced hydrogenase membrane protein CooM
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1880 -110 4.3 TTTACTATTTTTTTCACGAT
Desulfovibrio vulgaris Hildenborough DVU2286 -116 4.4 ATTGGGAATCGATTCACAAA
Position: -12
Score: 5
Sequence: CTCGTGAAATTAATGACAAG
Locus tag: Dvul_1235
Dvul_1235 -12 5 CTCGTGAAATTAATGACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: adk
Ortholog function: Adenylate kinase (EC 2.7.4.3)
Desulfohalobium retbaense DSM 5692 Dret_1683 -29 4.8 TTTGTGAAATTTTTCTTCAG
Desulfomicrobium baculatum DSM 4028 Dbac_0784 -31 5.2 TTTGTGAAATTTTTTACAGG
Desulfovibrio desulfuricans G20 Dde_2028 -12 5.1 TTCGTGAAATAAATGACAAG
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_1956 -51 4.6 TGTGTTCTTTTTTGCACAAT
Desulfovibrio magneticus RS-1 DMR_16390 -32 4.3 ATTGTGAAAAATCAAACATG
Desulfovibrio piger ATCC 29098 DESPIG_01460 -55 4.7 TCTGTTCTTTTTTGCACAAA
Desulfovibrio salexigens DSM 2638 Desal_1973 -39 5.1 TTTGTGAAATTTGTTACTAA
Desulfovibrio vulgaris Hildenborough DVU1932 -30 5 CTCGTGAAATTAATGACAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_0293 -30 5.1 CTCGTGAAAATTATTACAAG
Position: -288
Score: 4.1
Sequence: CGAGCTATATATTTCACAAA
Locus tag: Dvul_1249
Dvul_1249 -288 4.1 CGAGCTATATATTTCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hysB
Ortholog function: periplasmic [NiFeSe] hydrogenase, small subunit
Desulfovibrio desulfuricans G20 Dde_2134 -48 4.2 TTTGTAAAACTGTGCACAGG
Desulfovibrio salexigens DSM 2638 Desal_2050 21 4.7 TTCGTGAAAATGTGCACAGG
Desulfovibrio vulgaris Hildenborough DVU1917 -288 4.1 CGAGCTATATATTTCACAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0274 21 4.2 TTCGTCAAATTGTGCACAGG
Position: -79
Score: 5.2
Sequence: ATTGTGCTATTTGGCACAAA
Locus tag: Dvul_1498
Dvul_1498 -79 5.2 ATTGTGCTATTTGGCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppaC
Ortholog function: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
Desulfohalobium retbaense DSM 5692 Dret_1594 -84 5.3 TTTGTGCTATTTGGCACAAA
Desulfomicrobium baculatum DSM 4028 Dbac_0143 -58 5.3 ATTGTGATATTTAGCACAAT
Desulfovibrio desulfuricans G20 Dde_1778 -78 5.2 ATTGTGCTATTTGGCACAAA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0968 -70 4.4 TTTGTGCTAAAGAGTACAAA
Desulfovibrio magneticus RS-1 DMR_25800 -79 5.3 ATTGGGATATTATTCACAAG
Desulfovibrio piger ATCC 29098 DESPIG_01072 -101 4.6 CTTGTGCTAAAGGTAACAAG
Desulfovibrio salexigens DSM 2638 Desal_2248 -57 4.5 ATTGTGATAGAAGACACAAG
Desulfovibrio vulgaris Hildenborough DVU1636 -79 5.2 ATTGTGCTATTTGGCACAAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_0420 -92 5.3 TTTGTGCTATTTGGCACAAA
Position: -150
Score: 5.7
Sequence: TTTGTAAATTTTTTCACAAG
Locus tag: Dvul_1771
Dvul_1771 -150 5.7 TTTGTAAATTTTTTCACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sat
Ortholog function: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
Desulfohalobium retbaense DSM 5692 Dret_1968 -273 4.8 CTTGTGCAATAGCGCACAAG
-130 5.1 ATTGATAAAAAAATCACAAA
Desulfomicrobium baculatum DSM 4028 Dbac_3196 -114 4.8 GTTGATAAAAAAATCACAAA
-43 4.9 TTTGTGAAAATAAAAACAAA
Desulfovibrio desulfuricans G20 Dde_2265 -149 5.5 TTTGCTAAAAATTTCACAAG
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0454 -108 5.4 TTTGTTAGATTATTCACAAG
Desulfovibrio magneticus RS-1 DMR_39470 -140 4.2 TTTGACACATTTTTCACTTG
Desulfovibrio piger ATCC 29098 DESPIG_02241 -82 5.4 TTTGTTAGATTATTCACAAG
Desulfovibrio salexigens DSM 2638 Desal_0228 -242 4.6 CTTGACATTTCTTTCACAAA
Desulfovibrio vulgaris Hildenborough DVU1295 -150 5.7 TTTGTAAATTTTTTCACAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_0074 -164 5.4 TATGTAAAATATTTCACAAG
Position: -143
Score: 4.1
Sequence: TATGTGAAAAAAATCATTTT
Locus tag: Dvul_1774
Dvul_1774 -143 4.1 TATGTGAAAAAAATCATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Dret_0234
Ortholog function: hypothetical protein
Desulfohalobium retbaense DSM 5692 Dret_0234 -70 3.8 AATGTGAAATTCGGCACACA
Desulfomicrobium baculatum DSM 4028 Dbac_0269 -134 4.9 CTTGTTTCATTTTTCACAAA
Desulfovibrio desulfuricans G20 Dde_2270 -167 4 TATGTGAAAAAAATAATTAT
Desulfovibrio salexigens DSM 2638 Desal_0187 -118 3.9 AGTGTGACAGAATTCACATT
Desulfovibrio vulgaris Hildenborough DVU1291 -40 4.1 TATGTGAAAAAAATCATTTT
Position: -65
Score: 4.2
Sequence: CTTGTGAACGATTGCACGAA
Locus tag: Dvul_2064
Dvul_2064 -65 4.2 CTTGTGAACGATTGCACGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI1
Ortholog function: ATP synthase protein I
Desulfohalobium retbaense DSM 5692 Dret_2089 -11 4.6 CTTGTGAATGAATGCACGAA
Desulfomicrobium baculatum DSM 4028 Dbac_2797 -56 5.1 TTTGTGATTTATTGCACGAA
Desulfovibrio desulfuricans G20 Dde_2698 -151 4.8 CTTGTGAAAAATTTCTAAAA
-68 4.1 CTTGTGAAGGAATGCACGAA
Desulfovibrio magneticus RS-1 DMR_42140 -76 4.4 CTTGTGAACTTGTGCACGAG
Desulfovibrio piger ATCC 29098 DESPIG_02071 -11 4.7 ATTGTGATAATTTGTACATT
Desulfovibrio salexigens DSM 2638 Desal_3727 -74 4.1 CTTGTGAAGGTTTGCGCAAA
Desulfovibrio vulgaris Hildenborough DVU0920 61 4.2 CTTGTGAACGATTGCACGAA
Desulfovibrio vulgaris str. Miyazaki F DvMF_1386 -148 4.1 GTGGGGAATTTTTTCACGAA
-76 4.3 CTTGTGAACGTTTGCACGAA
Position: -168
Score: 4.6
Sequence: ATTGTTAATTCCATCACAAG
Locus tag: Dvul_2137
Dvul_2137 -168 4.6 ATTGTTAATTCCATCACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: apsB
Ortholog function: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
Desulfohalobium retbaense DSM 5692 Dret_1967 -167 4.4 CTTGCGCTAAATTTCACTTT
Desulfomicrobium baculatum DSM 4028 Dbac_3197 -95 5.2 TTTGATAAAAGATTCACAAG
Desulfovibrio desulfuricans G20 Dde_1109 -188 5.6 TTTGTTAAATATCTCACAAG
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2130 -140 4.4 CTTGTTACTAATTGCGCAAG
Desulfovibrio magneticus RS-1 DMR_05390 -279 4.4 CTTGTTAAACCGATCACAAG
Desulfovibrio piger ATCC 29098 DESPIG_02774 -142 4.4 CTTGTTACTAAAAACACAAG
Desulfovibrio salexigens DSM 2638 Desal_0229 -146 4.7 CTTGTTCTAAATTTCACTTT
Desulfovibrio vulgaris Hildenborough DVU0846 -168 4.6 ATTGTTAATTCCATCACAAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_2892 -171 5.1 ATTGTTAAATCAGTCACAAG
Position: -38
Score: 5
Sequence: TTTGAGCTTTAATTCACAAC
Locus tag: Dvul_2190
Dvul_2190 -38 5 TTTGAGCTTTAATTCACAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpF1
Ortholog function: ATP synthase B' chain (EC 3.6.3.14)
Desulfohalobium retbaense DSM 5692 Dret_2217 -35 4.3 TTTGAACCAAAATTCACATA
Desulfomicrobium baculatum DSM 4028 Dbac_3361 -36 4.9 TTTGAACAAAAATTCACAAC
Desulfovibrio desulfuricans G20 Dde_0990 -121 5 TTCAGGAAATTTTTCACAAG
-38 4.9 TTTGAGCTTAAATTCACAAC
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_2183 -113 5 CTTGCGAAATTTGTCACCAA
Desulfovibrio magneticus RS-1 DMR_04760 -163 4.6 TTCGGTCAATTCTTCACAAA
-36 5.1 TTTGCAAAAATTTTCACAAC
Desulfovibrio piger ATCC 29098 DESPIG_02016 -99 5 TTTGCGAATTTTGTCACCAA
Desulfovibrio salexigens DSM 2638 Desal_3459 -150 4.5 TTAGTTAAAAAAATAACAAG
-36 4.8 TTTGGACAAAAATTCACAAC
Desulfovibrio vulgaris Hildenborough DVU0780 -59 5 TTTGAGCTTTAATTCACAAC
Desulfovibrio vulgaris str. Miyazaki F DvMF_2826 -38 4.9 TTTGAGCTTAAATTCACAAC
Position: -107
Score: 5.1
Sequence: TTCGTGAAATATTTCACCTT
Locus tag: Dvul_2268
Dvul_2268 -107 5.1 TTCGTGAAATATTTCACCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: qrcA
Ortholog function: cytochrome c class III family protein
Desulfohalobium retbaense DSM 5692 Dret_0270 -176 4.8 ATCGTGAAATTTTTCATGAG
-102 4.7 CTCGTGAAATTGTGCACAGG
Desulfomicrobium baculatum DSM 4028 Dbac_3390 -116 4.5 ATCGTGATTTTTTTCATTAT
Desulfovibrio desulfuricans G20 Dde_2932 -110 5 TTCGTGAATTTTTTCACCTT
Desulfovibrio magneticus RS-1 DMR_18010 -217 5 TTCGTGAATTTTTTCATTAG
Desulfovibrio salexigens DSM 2638 Desal_1042 -112 4.8 TTTGTGAAAAGTTTCATATT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2690 -112 5.1 TTCGTGAAATATTTCACCTT
Position: -155
Score: 4.5
Sequence: TTTGTCCAAAAAATCACGAG
Locus tag: Dvul_2532
Dvul_2532 -155 4.5 TTTGTCCAAAAAATCACGAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsrA
Ortholog function: Sulfite reductase alpha subunit (EC 1.8.99.1)
Desulfohalobium retbaense DSM 5692 Dret_0244 -109 4.1 GTTGTACGAAAAATCACAAT
Desulfovibrio desulfuricans G20 Dde_0526 -153 4.2 TTTGTCCAAAAAATCACGTA
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Ddes_0921 -209 4 ATTTTTAAATATAAAACAAA
Desulfovibrio magneticus RS-1 DMR_03600 -166 4.1 ATTGTTCAAAACTTCACGTT
Desulfovibrio salexigens DSM 2638 Desal_0787 -177 4.2 GTTGTGTTTTTTTTCACTTA
Desulfovibrio vulgaris Hildenborough DVU0402 -155 4.5 TTTGTCCAAAAAATCACGAG
Desulfovibrio vulgaris str. Miyazaki F DvMF_1553 -151 4.5 TTTGTCCAAAAAATCACGAG
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