Propagation of Rex regulog to Desulfovibrio vulgaris Hildenborough
| Source regulog: | Rex - Desulfovibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Proteobacteria/delta |
| Propagated regulon: | |
| Target genome | Desulfovibrio vulgaris Hildenborough |
| Orthologous TF(s) | DVU0916 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -155
Score: 4.5 Sequence: TTTGTCCAAAAAATCACGAG
Locus tag: DVU0402
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| DVU0402 | -155 | 4.5 | TTTGTCCAAAAAATCACGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsrA | ||||
| Ortholog function: Sulfite reductase alpha subunit (EC 1.8.99.1) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0244 | -109 | 4.1 | GTTGTACGAAAAATCACAAT |
| Desulfovibrio desulfuricans G20 | Dde_0526 | -153 | 4.2 | TTTGTCCAAAAAATCACGTA |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_0921 | -209 | 4 | ATTTTTAAATATAAAACAAA |
| Desulfovibrio magneticus RS-1 | DMR_03600 | -166 | 4.1 | ATTGTTCAAAACTTCACGTT |
| Desulfovibrio salexigens DSM 2638 | Desal_0787 | -177 | 4.2 | GTTGTGTTTTTTTTCACTTA |
| Desulfovibrio vulgaris Hildenborough | DVU0402 | -155 | 4.5 | TTTGTCCAAAAAATCACGAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1553 | -151 | 4.5 | TTTGTCCAAAAAATCACGAG |
|
Position: -107
Score: 5.1 Sequence: TTCGTGAAATATTTCACCTT
Locus tag: null
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| null | -107 | 5.1 | TTCGTGAAATATTTCACCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: qrcA | ||||
| Ortholog function: cytochrome c class III family protein | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_0270 | -176 | 4.8 | ATCGTGAAATTTTTCATGAG |
| -102 | 4.7 | CTCGTGAAATTGTGCACAGG | ||
| Desulfomicrobium baculatum DSM 4028 | Dbac_3390 | -116 | 4.5 | ATCGTGATTTTTTTCATTAT |
| Desulfovibrio desulfuricans G20 | Dde_2932 | -110 | 5 | TTCGTGAATTTTTTCACCTT |
| Desulfovibrio magneticus RS-1 | DMR_18010 | -217 | 5 | TTCGTGAATTTTTTCATTAG |
| Desulfovibrio salexigens DSM 2638 | Desal_1042 | -112 | 4.8 | TTTGTGAAAAGTTTCATATT |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2690 | -112 | 5.1 | TTCGTGAAATATTTCACCTT |
|
Position: -59
Score: 5 Sequence: TTTGAGCTTTAATTCACAAC
Locus tag: DVU0780
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| DVU0780 | -59 | 5 | TTTGAGCTTTAATTCACAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpF1 | ||||
| Ortholog function: ATP synthase B' chain (EC 3.6.3.14) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2217 | -35 | 4.3 | TTTGAACCAAAATTCACATA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3361 | -36 | 4.9 | TTTGAACAAAAATTCACAAC |
| Desulfovibrio desulfuricans G20 | Dde_0990 | -121 | 5 | TTCAGGAAATTTTTCACAAG |
| -38 | 4.9 | TTTGAGCTTAAATTCACAAC | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2183 | -113 | 5 | CTTGCGAAATTTGTCACCAA |
| Desulfovibrio magneticus RS-1 | DMR_04760 | -163 | 4.6 | TTCGGTCAATTCTTCACAAA |
| -36 | 5.1 | TTTGCAAAAATTTTCACAAC | ||
| Desulfovibrio piger ATCC 29098 | DESPIG_02016 | -99 | 5 | TTTGCGAATTTTGTCACCAA |
| Desulfovibrio salexigens DSM 2638 | Desal_3459 | -150 | 4.5 | TTAGTTAAAAAAATAACAAG |
| -36 | 4.8 | TTTGGACAAAAATTCACAAC | ||
| Desulfovibrio vulgaris Hildenborough | DVU0780 | -59 | 5 | TTTGAGCTTTAATTCACAAC |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2826 | -38 | 4.9 | TTTGAGCTTAAATTCACAAC |
|
Position: -168
Score: 4.6 Sequence: ATTGTTAATTCCATCACAAG
Locus tag: DVU0846
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| DVU0846 | -168 | 4.6 | ATTGTTAATTCCATCACAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apsB | ||||
| Ortholog function: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1967 | -167 | 4.4 | CTTGCGCTAAATTTCACTTT |
| Desulfomicrobium baculatum DSM 4028 | Dbac_3197 | -95 | 5.2 | TTTGATAAAAGATTCACAAG |
| Desulfovibrio desulfuricans G20 | Dde_1109 | -188 | 5.6 | TTTGTTAAATATCTCACAAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_2130 | -140 | 4.4 | CTTGTTACTAATTGCGCAAG |
| Desulfovibrio magneticus RS-1 | DMR_05390 | -279 | 4.4 | CTTGTTAAACCGATCACAAG |
| Desulfovibrio piger ATCC 29098 | DESPIG_02774 | -142 | 4.4 | CTTGTTACTAAAAACACAAG |
| Desulfovibrio salexigens DSM 2638 | Desal_0229 | -146 | 4.7 | CTTGTTCTAAATTTCACTTT |
| Desulfovibrio vulgaris Hildenborough | DVU0846 | -168 | 4.6 | ATTGTTAATTCCATCACAAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_2892 | -171 | 5.1 | ATTGTTAAATCAGTCACAAG |
|
Position: -65
Score: 4.2 Sequence: CTTGTGAACGATTGCACGAA
Locus tag: null
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| null | -65 | 4.2 | CTTGTGAACGATTGCACGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI1 | ||||
| Ortholog function: ATP synthase protein I | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_2089 | -11 | 4.6 | CTTGTGAATGAATGCACGAA |
| Desulfomicrobium baculatum DSM 4028 | Dbac_2797 | -56 | 5.1 | TTTGTGATTTATTGCACGAA |
| Desulfovibrio desulfuricans G20 | Dde_2698 | -151 | 4.8 | CTTGTGAAAAATTTCTAAAA |
| -68 | 4.1 | CTTGTGAAGGAATGCACGAA | ||
| Desulfovibrio magneticus RS-1 | DMR_42140 | -76 | 4.4 | CTTGTGAACTTGTGCACGAG |
| Desulfovibrio piger ATCC 29098 | DESPIG_02071 | -11 | 4.7 | ATTGTGATAATTTGTACATT |
| Desulfovibrio salexigens DSM 2638 | Desal_3727 | -74 | 4.1 | CTTGTGAAGGTTTGCGCAAA |
| Desulfovibrio vulgaris Hildenborough | DVU0920 | 61 | 4.2 | CTTGTGAACGATTGCACGAA |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_1386 | -148 | 4.1 | GTGGGGAATTTTTTCACGAA |
| -76 | 4.3 | CTTGTGAACGTTTGCACGAA | ||
|
Position: -30
Score: 5 Sequence: CTCGTGAAATTAATGACAAG
Locus tag: DVU1932
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| DVU1932 | -30 | 5 | CTCGTGAAATTAATGACAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adk | ||||
| Ortholog function: Adenylate kinase (EC 2.7.4.3) | ||||
| Desulfohalobium retbaense DSM 5692 | Dret_1683 | -29 | 4.8 | TTTGTGAAATTTTTCTTCAG |
| Desulfomicrobium baculatum DSM 4028 | Dbac_0784 | -31 | 5.2 | TTTGTGAAATTTTTTACAGG |
| Desulfovibrio desulfuricans G20 | Dde_2028 | -12 | 5.1 | TTCGTGAAATAAATGACAAG |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1956 | -51 | 4.6 | TGTGTTCTTTTTTGCACAAT |
| Desulfovibrio magneticus RS-1 | DMR_16390 | -32 | 4.3 | ATTGTGAAAAATCAAACATG |
| Desulfovibrio piger ATCC 29098 | DESPIG_01460 | -55 | 4.7 | TCTGTTCTTTTTTGCACAAA |
| Desulfovibrio salexigens DSM 2638 | Desal_1973 | -39 | 5.1 | TTTGTGAAATTTGTTACTAA |
| Desulfovibrio vulgaris Hildenborough | DVU1932 | -30 | 5 | CTCGTGAAATTAATGACAAG |
| Desulfovibrio vulgaris str. Miyazaki F | DvMF_0293 | -30 | 5.1 | CTCGTGAAAATTATTACAAG |
|
Position: -116
Score: 4.4 Sequence: ATTGGGAATCGATTCACAAA
Locus tag: DVU2286
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| DVU2286 | -116 | 4.4 | ATTGGGAATCGATTCACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cooM | ||||
| Ortholog function: Carbon monoxide-induced hydrogenase membrane protein CooM | ||||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | Ddes_1880 | -110 | 4.3 | TTTACTATTTTTTTCACGAT |
| Desulfovibrio vulgaris Hildenborough | DVU2286 | -116 | 4.4 | ATTGGGAATCGATTCACAAA |