Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Staphylococcus lugdunensis HKU09-01

Reference regulog properties
Source regulog: CodY - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode: repressor
Biological process: Amino acid metabolism
Effector: Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus lugdunensis HKU09-01
Orthologous TF(s) SLGD_01640
Regulated genes 54
Built upon 516 sites [see more]
Predicted regulatory interactions in Staphylococcus lugdunensis HKU09-01
Locus tag Position Score Sequence
Position: -81
Score: 4.3
Sequence: AATTTATTGAATAAT
Locus tag: SLGD_00141
SLGD_00141 -81 4.3 AATTTATTGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ1
Ortholog function: branched-chain amino acid transport system
Staphylococcus aureus subsp. aureus N315 SA0180 -117 5.2 AATTTTCAAAAAATT
Staphylococcus capitis SK14 STACA0001_0024 -81 4.7 TTTTTTCTGAAAATT
Staphylococcus epidermidis ATCC 12228 SE0217 -173 4.4 AATATTAAAAATTTT
Staphylococcus haemolyticus JCSC1435 SH0145 -81 4.5 AATTTATTGAATATT
Macrococcus caseolyticus JCSC5402 MCCL_0050 -86 4.5 AATTTTTTAATTAAT
-77 4.8 ATTAATCAGAAAATT
Position: 18
Score: 4
Sequence: CATATTTTGATTAAT
Locus tag: SLGD_00325
SLGD_00325 18 4 CATATTTTGATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: capC
Ortholog function: capsular polysaccharide synthesis enzyme Cap8C
Staphylococcus aureus subsp. aureus N315 SA0146 -32 4.1 ATTTTAATGAAAATT
Position: 3
Score: 4.2
Sequence: AAAATTTTAAATATA
Locus tag: SLGD_00331
SLGD_00331 3 4.2 AAAATTTTAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: capI
Ortholog function: capsular polysaccharide synthesis enzyme Cap5I
Staphylococcus aureus subsp. aureus N315 SA0152 -32 4.1 ATTTTAATGAAAATT
Position: 11
Score: 4.1
Sequence: AAAATTATTAATATT
Locus tag: SLGD_00334
SLGD_00334 11 4.1 AAAATTATTAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: capL
Ortholog function: capsular polysaccharide synthesis enzyme Cap5L
Staphylococcus aureus subsp. aureus N315 SA0155 -32 4.1 ATTTTAATGAAAATT
Position: -143
Score: 4.7
Sequence: AATATTTTAAATAAT
Position: -67
Score: 4.4
Sequence: ATAATTCTGACAATT
Locus tag: SLGD_00355
SLGD_00355 -143 4.7 AATATTTTAAATAAT
-67 4.4 ATAATTCTGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysH
Ortholog function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
Staphylococcus capitis SK14 STACA0001_1812 -72 4.7 ATTATTCTGACAATT
Staphylococcus epidermidis ATCC 12228 SE2181 -69 4.7 ATTATTCTGACAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0058 -80 4.6 TATTTTCAGACAATT
Staphylococcus haemolyticus JCSC1435 SH0413 -69 4.7 ATTATTCTGACAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2409 -80 4.5 TATTTTCAAATAATT
Position: -73
Score: 4.7
Sequence: AATTTTCTGACTAAT
Locus tag: SLGD_00390
SLGD_00390 -73 4.7 AATTTTCTGACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2398
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA2398 -109 4.5 TATATTCTGATAATT
-100 4 ATAATTAAGAATTTT
Staphylococcus capitis SK14 STACA0001_0891 -131 4.3 TATTTTCTGAATTAT
-122 4.7 AATTATTAAAATATT
Staphylococcus epidermidis ATCC 12228 SE2150 -125 4.6 TATTTTCTGATAATT
-116 4.6 ATAATTTAGAATATT
Staphylococcus haemolyticus JCSC1435 SH0457 -89 5 AATTTTTAAAATATT
-80 4.8 AATATTCTAAATTTT
Position: -101
Score: 4.6
Sequence: ATTATTCAGAAAATA
Locus tag: SLGD_00392
SLGD_00392 -101 4.6 ATTATTCAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabT
Ortholog function: 4-aminobutyrate aminotransferase
Staphylococcus aureus subsp. aureus N315 SA2397 -136 4 AAAATTCTTAATTAT
-127 4.5 AATTATCAGAATATA
Staphylococcus capitis SK14 STACA0001_0892 -175 4.7 AATATTTTAATAATT
-166 4.3 ATAATTCAGAAAATA
Staphylococcus epidermidis ATCC 12228 SE2148 -164 4.6 AATATTCTAAATTAT
-155 4.6 AATTATCAGAAAATA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0283 -127 4.8 AAATATCTGAAAATT
Staphylococcus haemolyticus JCSC1435 SH0459 -145 4.6 ATTATTCAGAAAATA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0353 -218 4.6 ATTTTTCAGAATATA
Position: -142
Score: 5.3
Sequence: AATATTCTGAAAATT
Locus tag: SLGD_00421
SLGD_00421 -142 5.3 AATATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2357
Ortholog function: putative regulatory protein
Staphylococcus aureus subsp. aureus N315 SA2357 -188 4.2 CTTTATCTAAAAATT
-179 4.7 AAAATTCAGAATTTT
Staphylococcus capitis SK14 STACA0001_0926 -184 4.6 AATTATCTAAATTTT
-175 4.4 AATTTTCTGAAAACG
Staphylococcus epidermidis ATCC 12228 SE2129 -172 5.1 AATTTTCAGAAAAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2043 -282 4.7 CATATTTTGAAAATT
-69 4.5 TATTATCAGAATATT
Staphylococcus haemolyticus JCSC1435 SH0484 -156 5.3 AATATTCTGAAAATT
-147 4.1 AAAATTTAGAATTTG
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0292 -65 5.3 AATATTCTGAAAATT
-56 4.2 AAAATTAAGAAAATA
Position: -139
Score: 4.8
Sequence: AATTGTTAGAATATT
Locus tag: SLGD_00427
SLGD_00427 -139 4.8 AATTGTTAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtnE
Ortholog function: transaminase MtnE involved in methionine biosynthesis via salvage pathway
Staphylococcus aureus subsp. aureus N315 SA2347 -205 4.8 ATTAATCTGAAAATT
Staphylococcus capitis SK14 STACA0001_0934 -212 4.2 AAATGTTTGAAAATA
-93 4.6 ACTTATCTGAAAATT
Staphylococcus epidermidis ATCC 12228 SE2122 -61 4.4 TTATTTCAGAAAATT
-52 4.5 AAAATTCTAACTATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0010 -257 4.4 AAATGTCAGAATTTT
Staphylococcus haemolyticus JCSC1435 SH0492 -253 4.5 ATAAATCTGAAAATT
-244 4.4 AAAATTATAAATATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0294 -203 4.3 AATATTCTGATAAAA
Macrococcus caseolyticus JCSC5402 MCCL_0180 -222 4.8 AATATTCTGAATACT
Position: -39
Score: 5
Sequence: AATTATCTGAATATT
Locus tag: SLGD_00524
SLGD_00524 -39 5 AATTATCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysD
Ortholog function: O-acetylhomoserine sulfhydrylase
Staphylococcus haemolyticus JCSC1435 SH0593 -37 5 AATTATCAGAATATT
-28 4.2 AATATTCTATTAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0251 -41 5.1 AATTATCAGAAAATT
-32 4.2 AAAATTTAGAAATTA
Position: -325
Score: 4.7
Sequence: AATATTCAAACTATT
Locus tag: SLGD_00544
SLGD_00544 -325 4.7 AATATTCAAACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuCA
Ortholog function: glycine betaine/carnitine/choline ABC transporter opuCA
Staphylococcus capitis SK14 STACA0001_1036 -145 4.3 CATATTCAAAATTTT
Staphylococcus epidermidis ATCC 12228 SE2018 -80 4.1 ATTTGTTTAACAATT
Staphylococcus haemolyticus JCSC1435 SH0606 -134 4.1 ATTAATTAAAATTTT
Position: -194
Score: 4.2
Sequence: AAAATTTTGAAACTT
Locus tag: SLGD_00568
SLGD_00568 -194 4.2 AAAATTTTGAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aapA
Ortholog function: D-serine/D-alanine/glycine transporter
Staphylococcus aureus subsp. aureus N315 SA2226 -108 4.3 TATATTTAAAAAAAT
Staphylococcus aureus subsp. aureus N315 SA2227 -108 4.3 TATATTTAAAAAAAT
Staphylococcus capitis SK14 STACA0001_1050 -166 4.8 AATTTTTTGATTATT
-157 4.7 ATTATTCTAAAAAAT
Staphylococcus epidermidis ATCC 12228 SE2004 -93 4.9 ATATTTCTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1918 -126 4.6 AATTTTCTTATAATT
Staphylococcus haemolyticus JCSC1435 SH0623 -231 5.1 AATTTTCAGAAATTT
Position: -136
Score: 4.4
Sequence: TATTGTTAGAAAATT
Position: -125
Score: 4.1
Sequence: AATTTTGTAAATATA
Locus tag: SLGD_00890
SLGD_00890 -136 4.4 TATTGTTAGAAAATT
-125 4.1 AATTTTGTAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmrA
Ortholog function: N-acyl-L-amino acid amidohydrolase
Staphylococcus aureus subsp. aureus N315 SA1935 -143 4.5 AGTTATTAGAAAATT
Staphylococcus capitis SK14 STACA0001_0837 -235 4.6 AATTGTAAGAAAATT
Staphylococcus epidermidis ATCC 12228 SE1731 -113 4.6 AATTGTAAGAAAATT
-102 4.2 AATTGTGTAAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1636 -176 4.1 AATTTATTAAATTTT
Staphylococcus haemolyticus JCSC1435 SH0902 -179 4.7 AATTTTCAAAATTAT
-52 4.5 AATATCCAAAATATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0752 -190 4.1 TATTTTTATAAATTT
-181 4.6 AAATTTCAGAAAATG
Position: -41
Score: 4.8
Sequence: AAAATTTTGAATATT
Locus tag: SLGD_00966
SLGD_00966 -41 4.8 AAAATTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: alpha-keto-beta-hydroxylacil reductoisomerase
Staphylococcus aureus subsp. aureus N315 SA1861 -301 4.9 AATTTTTAGACAATT
-53 4.5 ATATTTCAGAATTTT
Staphylococcus capitis SK14 STACA0001_0523 -49 5.2 AATATTTTGAAAATT
-40 4.3 AAAATTAAGAATTTT
Staphylococcus epidermidis ATCC 12228 SE1657 -50 4.9 ATTATTTTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1562 -52 4.8 AAAATTCTAAATATT
Staphylococcus haemolyticus JCSC1435 SH0977 -54 4.9 AATTTTAAGAATATT
-45 5.1 AATATTCTAAATATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0822 -323 4.2 AATTGACAGAAAAAT
-266 4 ATTTATCAAATTTTT
-258 4.7 AATTTTTAGATATTT
-249 4.1 ATATTTCAAACAAAT
Macrococcus caseolyticus JCSC5402 MCCL_0858 -266 5.2 AATTTTTAGAAAATT
-257 4.7 AAAATTTTAAATATT
Position: -337
Score: 4.9
Sequence: AATTGTTAGAAAATT
Position: -272
Score: 4.4
Sequence: AATTTTAAAACAATT
Locus tag: SLGD_00969
SLGD_00969 -337 4.9 AATTGTTAGAAAATT
-272 4.4 AATTTTAAAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: dihydroxy-acid dehydratase
Staphylococcus aureus subsp. aureus N315 SA1858 -301 4.9 AATTTTTAGACAATT
-53 4.5 ATATTTCAGAATTTT
Staphylococcus capitis SK14 STACA0001_0526 -327 4.9 AATTGTTAGAAAATT
Staphylococcus epidermidis ATCC 12228 SE1654 -330 5.2 AATTTTTAGAAAATT
-321 4.1 AAAATTCTAAATTTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1559 -316 4.8 AATTTTAAAAAAATT
-307 4.3 AAAATTCTAATAAAT
Staphylococcus haemolyticus JCSC1435 SH0980 -321 4.4 AGTTGTTAGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0825 -323 4.2 AATTGACAGAAAAAT
-266 4 ATTTATCAAATTTTT
-258 4.7 AATTTTTAGATATTT
-249 4.1 ATATTTCAAACAAAT
Macrococcus caseolyticus JCSC5402 MCCL_0860 -266 5.2 AATTTTTAGAAAATT
-257 4.7 AAAATTTTAAATATT
Position: -95
Score: 4.8
Sequence: AATAGTCTAAAAATT
Locus tag: SLGD_00986
SLGD_00986 -95 4.8 AATAGTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: agrB
Ortholog function: accessory gene regulator B
Staphylococcus aureus subsp. aureus N315 SA1842 -261 4.6 AAAATTCTTAAAATT
Staphylococcus haemolyticus JCSC1435 SH0996 -124 4.1 ATATGTTAAAATATT
Position: -88
Score: 4.6
Sequence: AATTTTTAGAGAATT
Locus tag: SLGD_01198
SLGD_01198 -88 4.6 AATTTTTAGAGAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA1555 -114 4.1 ACATTTCTAATTATT
-105 4.6 ATTATTCAAAATTTT
-56 4.3 AATTTTCTATATAAT
Staphylococcus capitis SK14 STACA0001_0627 -110 4.3 ATTTTTCAAAAATCT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1339 -159 4.1 ATAATTATGATAATT
-150 4.2 ATAATTCTGATTTTT
Staphylococcus haemolyticus JCSC1435 SH1188 -92 4.9 AATTTTTAGATAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1029 -119 4.9 AATTTTCAAAATAAT
Macrococcus caseolyticus JCSC5402 MCCL_1410 -39 4.5 ATTTTTCAAAATATA
Position: -82
Score: 4.6
Sequence: AATTCTCTAAAAATT
Locus tag: SLGD_01199
SLGD_01199 -82 4.6 AATTCTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: acetyl-CoA synthetase
Staphylococcus aureus subsp. aureus N315 SA1554 -78 4.6 AAAATTTTGAATAAT
-69 4.1 AATAATTAGAAATGT
Staphylococcus capitis SK14 STACA0001_0626 -78 4.3 AGATTTTTGAAAAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1338 -96 4.2 AAAAATCAGAATTAT
-87 4.1 AATTATCATAATTAT
Staphylococcus haemolyticus JCSC1435 SH1189 -87 4.9 AATTATCTAAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1030 -75 4.9 ATTATTTTGAAAATT
Macrococcus caseolyticus JCSC5402 MCCL_1409 -48 4.5 TATATTTTGAAAAAT
Position: -56
Score: 5.3
Sequence: AATTTTCAGAATATT
Locus tag: SLGD_01208
SLGD_01208 -56 5.3 AATTTTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1544
Ortholog function: putative phosphoserine transaminase
Staphylococcus aureus subsp. aureus N315 SA1544 -54 5.4 AATTTTCAGAAAATT
Staphylococcus capitis SK14 STACA0001_0615 -53 5.2 AATATTCAGAATATT
Staphylococcus epidermidis ATCC 12228 SE1400 -54 5 AATATTCAGAATTTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1329 -55 4.9 TATTTTCAGAATATT
Staphylococcus haemolyticus JCSC1435 SH1201 -55 5 AATTATCAGAATATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1040 -55 4.9 TATTTTCTGAAAATT
Position: -66
Score: 4.6
Sequence: ATTATTTTGATAATT
Locus tag: SLGD_01381
SLGD_01381 -66 4.6 ATTATTTTGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1364
Ortholog function: putative sulfurtransferase
Staphylococcus aureus subsp. aureus N315 SA1364 -66 4.8 AATATTTTGATAATT
Staphylococcus capitis SK14 STACA0001_1771 -66 4.6 AATATTTTGATAAAT
Staphylococcus epidermidis ATCC 12228 SE1218 -66 4.6 AATATTTTGATAAAT
Staphylococcus haemolyticus JCSC1435 SH1382 -66 4.3 AAAATTTTGATAAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1221 -67 4.6 AATATTTTGATAAAT
Position: -99
Score: 4.6
Sequence: AATTATCAAAATAAT
Locus tag: SLGD_01382
SLGD_01382 -99 4.6 AATTATCAAAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1363
Ortholog function: Lipoate-protein ligase A
Staphylococcus aureus subsp. aureus N315 SA1363 -106 4.8 AATTATCAAAATATT
Staphylococcus capitis SK14 STACA0001_1770 -109 4.6 ATTTATCAAAATATT
Staphylococcus epidermidis ATCC 12228 SE1217 -108 4.6 ATTTATCAAAATATT
Staphylococcus haemolyticus JCSC1435 SH1383 -100 4.3 ATTTATCAAAATTTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1222 -121 4.6 ATTTATCAAAATATT
Position: -122
Score: 4.2
Sequence: AATTTTATCAATATT
Locus tag: SLGD_01464
SLGD_01464 -122 4.2 AATTTTATCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: trpE
Ortholog function: anthranilate synthase component I
Staphylococcus aureus subsp. aureus N315 SA1199 -439 4.5 AATAATTAGAATTTT
Staphylococcus capitis SK14 STACA0001_1613 -438 4.6 AATAATTAGAAAAAT
-429 4.4 AAAAATCAGATAATT
Staphylococcus epidermidis ATCC 12228 SE1048 -431 4.6 AATAATTAGAAAAAT
-422 4.4 AAAAATCAGATAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1012 -464 4.3 CATTATTAAAAAATT
Staphylococcus haemolyticus JCSC1435 SH1542 -453 4.3 AAATATCAAACAATT
Position: -347
Score: 4.4
Sequence: AATTGTCAGTAAATT
Locus tag: SLGD_01486
SLGD_01486 -347 4.4 AATTGTCAGTAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lysC
Ortholog function: aspartokinase II
Staphylococcus carnosus subsp. carnosus TM300 Sca_1037 -340 4.3 AAATTTCTAAAAATC
Staphylococcus haemolyticus JCSC1435 SH1518 -344 4.1 ATTTTTCAGTCTATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1357 -350 4.5 ATTTTTCAGTAAATT
-341 4.3 TAAATTTAAAAAATT
Position: -87
Score: 4.7
Sequence: AATTTTCTGAAATTA
Locus tag: SLGD_01501
SLGD_01501 -87 4.7 AATTTTCTGAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: braB
Ortholog function: branched-chain amino acid transport system
Staphylococcus capitis SK14 STACA0001_1652 -85 4.7 AATTTTCTGAAATTA
Staphylococcus epidermidis ATCC 12228 SE1090 -87 5.1 AATTTTCTGAAATTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1051 -96 4.7 AATTTTCAGAAAGTT
Staphylococcus haemolyticus JCSC1435 SH1502 -87 4.2 AATTTTCTGAAATCA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1343 -95 4.5 ATATTTTTAAATATT
-86 5 AATATTCTGAAATTT
Macrococcus caseolyticus JCSC5402 MCCL_1059 -84 4.9 AATATTCAGAAAATA
Position: -34
Score: 4.6
Sequence: TTTATTCTGAAAATT
Locus tag: SLGD_01535
SLGD_01535 -34 4.6 TTTATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrA
Ortholog function: prephenate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1197 -34 5.1 ATTATTCTGAAAATT
Staphylococcus capitis SK14 STACA0001_1611 -35 4.8 ACTATTCTGAAAATT
Staphylococcus epidermidis ATCC 12228 SE1047 -251 4.4 AATTATCTGATTTTT
-242 4.6 ATTTTTCTAATTATT
-35 4.4 GTTATTCTGAAAATT
Staphylococcus haemolyticus JCSC1435 SH1544 -35 4.8 CATATTCTGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1387 -36 4.8 ACTATTCTGAAAATT
Position: -153
Score: 4
Sequence: GATTTTGAGAATATT
Position: -131
Score: 4.7
Sequence: AATATTTTAAATTTT
Position: -122
Score: 4.8
Sequence: AATTTTCTGATATTT
Locus tag: SLGD_01564
SLGD_01564 -153 4 GATTTTGAGAATATT
-131 4.7 AATATTTTAAATTTT
-122 4.8 AATTTTCTGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: katA
Ortholog function: catalase
Staphylococcus aureus subsp. aureus N315 SA1170 -111 4.1 AAAAATTAAAATTTT
-102 4.7 AATTTTCTGATTTTT
Staphylococcus capitis SK14 STACA0001_1577 -131 4.7 AATATTTAAAAATTT
-121 5.1 AATTTTCTGAAATTT
Staphylococcus epidermidis ATCC 12228 SE1016 -142 4.1 AATTGTTAAATTTTT
-133 4.6 ATTTTTCTGATATTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_2336 -28 4.1 ATTATTCTAAATAAG
Staphylococcus haemolyticus JCSC1435 SH1573 -123 4.4 AAAATTTTAAATTTT
-114 5.1 AATTTTCTGAAATTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1432 -129 4.4 AAATGTTTAAATATT
Position: -113
Score: 4.8
Sequence: AAATATCAGAAAATT
Position: -104
Score: 4.7
Sequence: AAAATTTAAAATATT
Locus tag: SLGD_01565
SLGD_01565 -113 4.8 AAATATCAGAAAATT
-104 4.7 AAAATTTAAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocC
Ortholog function: amino acid permease
Staphylococcus aureus subsp. aureus N315 SA1169 -110 4.7 AAAAATCAGAAAATT
-101 4.1 AAAATTTTAATTTTT
Staphylococcus capitis SK14 STACA0001_1576 -112 5.1 AAATTTCAGAAAATT
-102 4.7 AAATTTTTAAATATT
Staphylococcus epidermidis ATCC 12228 SE1015 -112 4.6 AAATATCAGAAAAAT
-103 4.1 AAAAATTTAACAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0975 -121 4.3 TTTTTTCAGAATTTT
-112 4.7 AATTTTTTAAATTTT
Staphylococcus haemolyticus JCSC1435 SH1574 -114 5.1 AAATTTCAGAAAATT
-105 4.4 AAAATTTAAAATTTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1433 -111 4.4 AATATTTAAACATTT
Macrococcus caseolyticus JCSC5402 MCCL_0990 -56 4.4 AATTTTCTTAATTAT
Position: -175
Score: 4.7
Sequence: AAAAATCAGAAAATT
Locus tag: SLGD_01570
SLGD_01570 -175 4.7 AAAAATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hom
Ortholog function: homoserine dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1164 -170 4.7 AAAAATCAGAAAATT
-118 4.6 TATATTTTGAATATT
Staphylococcus capitis SK14 STACA0001_1571 -170 4.7 AAAAATCAGAAAATT
-91 4.3 AAAATTAAGAATAAT
Staphylococcus epidermidis ATCC 12228 SE1009 -170 4.7 AAAAATCAGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0970 -127 4.2 AAATTTCAACATATT
-109 4.4 AATTTTTTGAACTTT
Staphylococcus haemolyticus JCSC1435 SH1579 -178 4.7 AAAAATCAGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1438 -168 4.7 AAAAATCAGAAAATT
Position: -32
Score: 4.7
Sequence: AATTTTCTGATTTTT
Locus tag: SLGD_01571
SLGD_01571 -32 4.7 AATTTTCTGATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrA
Ortholog function: aspartokinase III
Staphylococcus aureus subsp. aureus N315 SA1163 -87 4.6 AATATTCAAAATATA
-35 4.7 AATTTTCTGATTTTT
Staphylococcus capitis SK14 STACA0001_1570 -33 4.7 AATTTTCTGATTTTT
Staphylococcus epidermidis ATCC 12228 SE1008 -33 4.7 AATTTTCTGATTTTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0969 -97 4.4 AAAGTTCAAAAAATT
-79 4.2 AATATGTTGAAATTT
Staphylococcus haemolyticus JCSC1435 SH1580 -35 4.7 AATTTTCTGATTTTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1439 -35 4.7 AATTTTCTGATTTTT
Position: -32
Score: 4.5
Sequence: AATTTTCAAATAATA
Locus tag: SLGD_01760
SLGD_01760 -32 4.5 AATTTTCAAATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pycA
Ortholog function: pyruvate carboxylase
Staphylococcus aureus subsp. aureus N315 SA0963 -41 4.6 ATTAGTTAGAAAATT
Staphylococcus capitis SK14 STACA0001_2249 -42 4.6 ATTAGTTAGAAAATT
-33 4.4 AAAATTCAAAAAATA
Staphylococcus epidermidis ATCC 12228 SE0813 -40 4.1 TATTATCTAATTATT
-31 4.9 ATTATTTAGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0740 -34 4.6 AAAATTCAAATAATT
Staphylococcus haemolyticus JCSC1435 SH1838 -41 4.5 ATTAGTTAGAATATT
-32 4 AATATTCAAACTTTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1675 -38 4.7 ACTTTTTAGAAAATT
-29 4.1 AAAATTCAAAATTTA
Position: -117
Score: 4.7
Sequence: AAAATTTAAAATATT
Position: -108
Score: 4.3
Sequence: AATATTAAGTAAATT
Locus tag: SLGD_01826
SLGD_01826 -117 4.7 AAAATTTAAAATATT
-108 4.3 AATATTAAGTAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: patA
Ortholog function: putative aminotransferase A
Staphylococcus aureus subsp. aureus N315 SA0902 -50 4.2 TAATTTCTAAATTTT
-41 4.4 AATTTTTAGACAATA
Staphylococcus capitis SK14 STACA0001_2317 -58 4.1 ACTATTTTAACAATT
Staphylococcus epidermidis ATCC 12228 SE0747 -59 4.1 ACTATTTAAACAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0656 -108 4.2 TTTATTCTAAAATTT
Staphylococcus haemolyticus JCSC1435 SH1916 -65 4.9 ATTATTCTAAAAATT
Macrococcus caseolyticus JCSC5402 MCCL_1585 -86 4.3 AATGTTCTAATAATT
Position: -146
Score: 4.7
Sequence: AATATTCTGACATTT
Locus tag: SLGD_01839
SLGD_01839 -146 4.7 AATATTCTGACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: competence transcription factor
Staphylococcus aureus subsp. aureus N315 SA0882 -147 4.9 AATATTCTGACTATT
Staphylococcus capitis SK14 STACA0001_0106 -151 4.7 AATATTCTGACATTT
Staphylococcus epidermidis ATCC 12228 SE0731 -147 4.7 AATATTCTGACATTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0642 -145 4.6 AATATTCTGACTTTT
-136 4.1 ACTTTTTAAAAAATA
Staphylococcus haemolyticus JCSC1435 SH1926 -148 4.6 AATATTCTGACTTTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1755 -186 4.6 AATATTCAGACTTTT
-92 4.5 AAATTTATAAAAATT
Macrococcus caseolyticus JCSC5402 MCCL_1546 -195 4.8 ATAATTCTGAAAATT
-186 4.4 AAAATTTAAATTATT
-86 4.7 AAATTTCTTAAAATT
Position: -87
Score: 4.7
Sequence: AAATGTCAGAATATT
Locus tag: SLGD_01840
SLGD_01840 -87 4.7 AAATGTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0883
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA0883 -77 4.9 AATAGTCAGAATATT
Staphylococcus capitis SK14 STACA0001_0107 -83 4.7 AAATGTCAGAATATT
Staphylococcus epidermidis ATCC 12228 SE0729 -82 4.7 AAATGTCAGAATATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0643 -178 4.2 AATTATAAAAATAAT
-91 4.1 TATTTTTTAAAAAGT
-82 4.6 AAAAGTCAGAATATT
Staphylococcus haemolyticus JCSC1435 SH1925 -80 4.6 AAAAGTCAGAATATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1756 -174 4.5 AATTTTTATAAATTT
-80 4.6 AAAAGTCTGAATATT
Position: -58
Score: 4.8
Sequence: ATATTTCTGAATATT
Locus tag: SLGD_01879
SLGD_01879 -58 4.8 ATATTTCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: oligopeptide ABC transporter permease protein OppB
Staphylococcus aureus subsp. aureus N315 SA0845 -66 4.7 AGATTTCAGAAAATT
Staphylococcus capitis SK14 STACA0001_0146 -36 4.2 AATATACATAATATT
-27 4.6 AATATTCTGAAAAAA
Staphylococcus epidermidis ATCC 12228 SE0680 -63 4.9 ATATTTCTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0588 -113 5.2 AATATTCTAAAAATT
-65 4.2 AATATTAAAATATTT
-56 4.9 ATATTTCTGAAAATT
Staphylococcus haemolyticus JCSC1435 SH1970 -116 4.7 AATTTTGTGAAAATT
-60 4.9 ATATTTCTGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1794 -56 4.8 ATATTTCTGAATATT
Macrococcus caseolyticus JCSC5402 MCCL_0605 -186 4.8 AATTTTTAAAAAAAT
-132 4.8 AATCTTCTGAAAATT
Position: -109
Score: 4.8
Sequence: AATATTCTTAATATT
Locus tag: SLGD_02105
SLGD_02105 -109 4.8 AATATTCTTAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tppB
Ortholog function: di-tripepride ABC transporter
Staphylococcus aureus subsp. aureus N315 SA0682 -112 4.6 AATATTCTCAATATT
-103 4.1 AATATTTTTATTTTT
Staphylococcus capitis SK14 STACA0001_0301 -124 4.3 AATTGACTGAATATT
-115 4.5 AATATTCATATTATT
-98 4.8 TATTTTTTGAAAATT
Staphylococcus epidermidis ATCC 12228 SE0509 -107 4 CTTTTTTTAAATTTT
-98 5.2 AATTTTTTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0374 -114 5.3 AATATTCTGAAAATT
-88 4.5 TATTTTAAGAAAATT
Staphylococcus haemolyticus JCSC1435 SH2166 -102 5 AAATTTCTAAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1991 -118 4.1 AAATAACAGAATATT
-109 4.6 AATATTCTCAATATT
Macrococcus caseolyticus JCSC5402 MCCL_0478 -117 4.6 AACTTTTTGAAAATT
-36 5.3 AATTTTCAGAATATT
Position: -90
Score: 5.2
Sequence: AATTTTTAGAAAATT
Locus tag: SLGD_02332
SLGD_02332 -90 5.2 AATTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvE
Ortholog function: branched-chain amino acid aminotransferase
Staphylococcus aureus subsp. aureus N315 SA0512 -92 5.2 AATTTTTAGAAAATT
Staphylococcus capitis SK14 STACA0001_0476 -101 4.4 TTTATTTTGAATATT
-92 4.7 AATATTTAGAAAACT
Staphylococcus epidermidis ATCC 12228 SE0318 -99 4.1 TCTATTTTGAATATT
-90 5.2 AATATTTAGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0215 -101 4.5 ATTTTTTTAAATTTT
-92 4.8 AATTTTCTAAAAACT
Staphylococcus haemolyticus JCSC1435 SH2449 -91 5.2 AATTTTTAGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2163 -86 5.2 AATTTTTTGAAAATT
Macrococcus caseolyticus JCSC5402 MCCL_1855 -85 4.8 AATTTTCTAAAAACT
Position: -121
Score: 4.4
Sequence: ATTGTTCTAAAAATT
Position: -36
Score: 5.3
Sequence: AATATTCAGAAAATT
Locus tag: SLGD_02444
SLGD_02444 -121 4.4 ATTGTTCTAAAAATT
-36 5.3 AATATTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase large subunit
Staphylococcus aureus subsp. aureus N315 SA0430 -35 4.3 TAATATCAGAATATT
-26 4.4 AATATTCTAAAAAAG
Staphylococcus capitis SK14 STACA0001_1494 -174 4.6 AAAATTCTAAAATTT
-36 5 AATTGTCAGAAAATT
Staphylococcus epidermidis ATCC 12228 SE2312 -35 5 AATTGTCAGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0105 -117 4.5 AATAATTAGAATAAT
-43 4.7 AAAAATCTGAAAATT
Staphylococcus haemolyticus JCSC1435 SH2540 -34 5.4 AATTTTCTGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2284 -34 5 AATTTTCAGAATTTT
Position: -122
Score: 5.3
Sequence: AATTTTCTGAATATT
Position: -37
Score: 4.4
Sequence: AATTTTTAGAACAAT
Locus tag: SLGD_02445
SLGD_02445 -122 5.3 AATTTTCTGAATATT
-37 4.4 AATTTTTAGAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltC
Ortholog function: transcription activator of glutamate synthase operon
Staphylococcus aureus subsp. aureus N315 SA0429 -169 4.4 CTTTTTTAGAATATT
-160 4.3 AATATTCTGATATTA
Staphylococcus capitis SK14 STACA0001_1493 -179 5 AATTTTCTGACAATT
-41 4.6 AAATTTTAGAATTTT
Staphylococcus epidermidis ATCC 12228 SE2313 -171 5 AATTTTCTGACAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0104 -113 4.7 AATTTTCAGATTTTT
-39 4.5 ATTATTCTAATTATT
Staphylococcus haemolyticus JCSC1435 SH2541 -138 5.4 AATTTTCAGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2285 -118 5 AAAATTCTGAAAATT
Position: -149
Score: 5.3
Sequence: AATATTCTGAAAATT
Locus tag: SLGD_02479
SLGD_02479 -149 5.3 AATATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0367
Ortholog function: putative NADPH-flavin oxidoreductase
Staphylococcus aureus subsp. aureus N315 SA0367 -121 4.2 AATATTTTTAAAAGT
Staphylococcus capitis SK14 STACA0001_1449 -145 4.8 AAATATCTGAAAATT
Staphylococcus epidermidis ATCC 12228 SE2355 -114 5.1 AATTATCTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0041 -140 4.3 AATATTTATATTATT
Staphylococcus haemolyticus JCSC1435 SH2590 -144 4.8 AAATATCTGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2331 -193 4.3 AATAATTTAACTATT
Position: -31
Score: 5.3
Sequence: AATTTTCAGAATATT
Locus tag: SLGD_02480
SLGD_02480 -31 5.3 AATTTTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE2356
Ortholog function: 2-oxo-hepta-3-ene-1,7-dioate hydratase
Staphylococcus capitis SK14 STACA0001_1448 -29 4.8 AATTTTCAGATATTT
Staphylococcus epidermidis ATCC 12228 SE2356 -32 5.1 AATTTTCAGATAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0040 -34 4.3 AATAATATAAATATT
Staphylococcus haemolyticus JCSC1435 SH2591 -28 4.8 AATTTTCAGATATTT
Position: -219
Score: 4.9
Sequence: ACTTTTCTGAAAATT
Position: -85
Score: 4.8
Sequence: AATTTTTAAAATAAT
Locus tag: SLGD_02499
SLGD_02499 -219 4.9 ACTTTTCTGAAAATT
-85 4.8 AATTTTTAAAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0348
Ortholog function: putative transcriptional regulator
Staphylococcus aureus subsp. aureus N315 SA0348 -176 5.1 ATTATTCAGAAAATT
Staphylococcus capitis SK14 STACA0001_1417 -209 4.9 ACTTTTCTGAAAATT
-75 4.8 AATTTTTAAAATAAT
Staphylococcus epidermidis ATCC 12228 SE2378 -210 5.1 ATTTTTCTGAAAATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0015 -192 5.1 AATTTTCAGAATAAT
-115 4.9 AATTTTTTGAATTTT
Staphylococcus haemolyticus JCSC1435 SH2634 -279 4.9 ACTTTTCTGAAAATT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2412 -127 4.6 ACTTATCTGAAAATT
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