Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Staphylococcus epidermidis ATCC 12228

Reference regulog properties
Source regulog: CcpA - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus epidermidis ATCC 12228
Orthologous TF(s) SE1409
Regulated genes 48
Built upon 391 sites [see more]
Predicted regulatory interactions in Staphylococcus epidermidis ATCC 12228
Locus tag Position Score Sequence
Position: -50
Score: 4.6
Sequence: TTGAAAGCGTTTTATA
Locus tag: SE0106
SE0106 -50 4.6 TTGAAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: arginine deiminase
Staphylococcus epidermidis ATCC 12228 SE0106 -50 4.6 TTGAAAGCGTTTTATA
Staphylococcus haemolyticus JCSC1435 SH0367 -50 4.7 ATGAAAGCGCTTTATA
Position: -61
Score: 4.7
Sequence: TATTAAGCGCTTACAT
Locus tag: SE0164
SE0164 -61 4.7 TATTAAGCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uhpT
Ortholog function: hexose phosphate transport protein
Staphylococcus aureus subsp. aureus N315 SA0214 -61 4.3 TATTAAGCGCTTACAC
Staphylococcus epidermidis ATCC 12228 SE0164 -61 4.7 TATTAAGCGCTTACAT
Position: -37
Score: 4.8
Sequence: TTGAAAACGTTAACAA
Locus tag: SE0214
SE0214 -37 4.8 TTGAAAACGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate lyase
Staphylococcus aureus subsp. aureus N315 SA0218 -59 4.9 ATGAAAACGTTAACAT
Staphylococcus epidermidis ATCC 12228 SE0214 -37 4.8 TTGAAAACGTTAACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2017 -58 4.3 GTGAAAACGGTAACAT
Macrococcus caseolyticus JCSC5402 MCCL_0434 -94 4.8 TTTTAAACGTTTACAT
Position: -146
Score: 4.6
Sequence: TTGAAAGCGTATACTA
Locus tag: SE0235
SE0235 -146 4.6 TTGAAAGCGTATACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE0235
Ortholog function: glycerol dehydrogenase
Staphylococcus epidermidis ATCC 12228 SE0235 -146 4.6 TTGAAAGCGTATACTA
Position: 2
Score: 4.3
Sequence: GTTGAAACGCTTTCAT
Locus tag: SE0247
SE0247 2 4.3 GTTGAAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE0247
Ortholog function: major myo-inositol transporter IolT
Staphylococcus capitis SK14 STACA0001_0048 -61 4.9 ATTAAAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE0247 2 4.3 GTTGAAACGCTTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1871 -47 4.7 ATGAAAGCGTATACTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0532 -47 4.7 ATGAAAGCGTATACTT
Position: -37
Score: 5.1
Sequence: AAGAAAGCGCTTACAA
Locus tag: SE0253
SE0253 -37 5.1 AAGAAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoL
Ortholog function: dihydrolipoamide dehydrogenase
Staphylococcus epidermidis ATCC 12228 SE0253 -37 5.1 AAGAAAGCGCTTACAA
Staphylococcus haemolyticus JCSC1435 SH0227 -91 4.6 ATAAAAGCGCTTACAA
Staphylococcus haemolyticus JCSC1435 SH0223 -103 4.7 GAGAAAACGCTTACAT
Position: -63
Score: 4.2
Sequence: ATGTTAGCGTGTTCAT
Locus tag: SE0283
SE0283 -63 4.2 ATGTTAGCGTGTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: pyrimidine nucleoside transporter
Staphylococcus aureus subsp. aureus N315 SA0479 -63 4.4 ATGTTAGCCCTTCCAT
Staphylococcus capitis SK14 STACA0001_0514 -61 4.3 ATGTTAGCGCGTTCAT
Staphylococcus epidermidis ATCC 12228 SE0283 -63 4.2 ATGTTAGCGTGTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2235 -65 4.2 ATGTAAGTGCTATCAA
Macrococcus caseolyticus JCSC5402 MCCL_1890 -70 4 TGTTTAGCGCTTTCAT
Position: -180
Score: 5
Sequence: ATGTAAGGGCTTACAT
Locus tag: SE0653
SE0653 -180 5 ATGTAAGGGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocD
Ortholog function: ornithine aminotransferase
Staphylococcus aureus subsp. aureus N315 SA0818 -150 4.9 ATGTAAGGGTTTTCAA
Staphylococcus capitis SK14 STACA0001_0169 -184 4.9 TTGTAAGGGCTTTCAA
Staphylococcus epidermidis ATCC 12228 SE0653 -180 5 ATGTAAGGGCTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_0565 -49 4.8 ATGTAAGGGCTTTCTT
Staphylococcus haemolyticus JCSC1435 SH1993 -161 4.5 CTGTAAGGGCTTTCAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1818 -198 5 ATGTAAGGGCTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_0583 -44 4.7 ATGTAAGGGTTTTCTA
Position: -41
Score: 4.3
Sequence: ATGAAAGCGAAATCAT
Locus tag: SE0654
SE0654 -41 4.3 ATGAAAGCGAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudB
Ortholog function: NAD-specific glutamate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA0819 -84 4.5 TTGTAAGGGCTTTAAA
-42 4.3 TTGAAAGCGAAATCAT
Staphylococcus capitis SK14 STACA0001_0168 -84 4.5 TTGTAAACCCTTTAAA
-41 4.3 TTGAAAGCGAAATCAT
Staphylococcus epidermidis ATCC 12228 SE0654 -74 4.1 TTTAAAATGCTTTCAA
-41 4.3 ATGAAAGCGAAATCAT
Staphylococcus haemolyticus JCSC1435 SH1992 -77 4.5 TTGAAAACCCTTTAAA
-35 4.3 ATGAAAGCGAAATCAT
Macrococcus caseolyticus JCSC5402 MCCL_0584 -93 4.6 TTGGTAGCGTTTTCAA
Position: -83
Score: 4.3
Sequence: ATGTAATTGTTTTCAT
Position: -62
Score: 4.4
Sequence: AAGTAACGGTTTTCAA
Locus tag: SE0715
SE0715 -83 4.3 ATGTAATTGTTTTCAT
-62 4.4 AAGTAACGGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA0873
Ortholog function: DJ-1/PfpI family protein
Staphylococcus aureus subsp. aureus N315 SA0873 -62 4.6 ATGTAACGGTTTTCAA
Staphylococcus capitis SK14 STACA0001_0121 -62 4.4 AAGTAACGGTTTTCAA
Staphylococcus epidermidis ATCC 12228 SE0715 -62 4.4 AAGTAACGGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0617 -64 4.4 TTGGTAACGATTTCAT
Staphylococcus haemolyticus JCSC1435 SH1944 -93 4.9 TTGTAAACCTTTTCAA
Position: -270
Score: 4.7
Sequence: ATGGAAGCGTTTTCTA
Locus tag: SE0840
SE0840 -270 4.7 ATGGAAGCGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: succinate dehydrogenase cytochrome b subunit
Staphylococcus aureus subsp. aureus N315 SA0994 -235 4.4 GTGGAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_2159 -286 4.4 GTGGAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE0840 -270 4.7 ATGGAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0765 -291 5 TTGTAAACGCTTTCTA
Staphylococcus haemolyticus JCSC1435 SH1814 -285 4.7 ATGGAAGCGTTTTCTA
-61 4 TTGAAAAGACTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1648 -232 4.7 ATGGAAGCGTTTTCTA
Macrococcus caseolyticus JCSC5402 MCCL_1319 -85 4.5 ATGTAATCGGTTTCTT
Position: -130
Score: 4.7
Sequence: TTGACAACGCTTACAA
Locus tag: SE0977
SE0977 -130 4.7 TTGACAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: glycerol uptake facilitator
Staphylococcus aureus subsp. aureus N315 SA1140 -133 4.8 TTGACAACGCTTTCAT
Staphylococcus capitis SK14 STACA0001_1544 -132 4.7 TTGACAACGCTTACAA
Staphylococcus epidermidis ATCC 12228 SE0977 -130 4.7 TTGACAACGCTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0948 -126 4.8 TTGACAACGCTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1614 -128 4.7 TTGACAACGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1461 -145 4.7 TTGACAACGCTTACAA
Macrococcus caseolyticus JCSC5402 MCCL_0891 -133 4.7 TTGACAACGTTTACAT
Position: -29
Score: 4.4
Sequence: GTGAAAGCGCTTGCTA
Locus tag: SE1007
SE1007 -29 4.4 GTGAAAGCGCTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1162
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA1162 -27 4.4 GTGAAAGCGCTTGCTT
Staphylococcus capitis SK14 STACA0001_1569 -30 4.8 ATGAAAGCGCTTGCTT
Staphylococcus epidermidis ATCC 12228 SE1007 -29 4.4 GTGAAAGCGCTTGCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0968 -30 4.7 TTGTAAGCGCTTACTC
Staphylococcus haemolyticus JCSC1435 SH1581 -29 4.8 ATGAAAGCGTTTCCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1440 -33 4.7 TTGGAAACGCTTACTT
Position: -103
Score: 4.4
Sequence: AATAAAGCGTTTTCTA
Locus tag: SE1032
SE1032 -103 4.4 AATAAAGCGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: aconitate hydratase
Staphylococcus aureus subsp. aureus N315 SA1184 -103 4.4 AATTAAGCGTTTTCTA
Staphylococcus capitis SK14 STACA0001_1597 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1032 -103 4.4 AATAAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0991 -68 4.5 TTGTAATCCCTTACTT
Macrococcus caseolyticus JCSC5402 MCCL_1008 -36 4 ATGTAAAGGCTTTATC
Position: -117
Score: 4.7
Sequence: ATGTAAACGTTTTCTC
Locus tag: SE1191
SE1191 -117 4.7 ATGTAAACGTTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: malA
Ortholog function: alpha-D-1,4-glucosidase
Staphylococcus aureus subsp. aureus N315 SA1338 -43 4.4 TTGGAAGCGTTTTCCA
Staphylococcus epidermidis ATCC 12228 SE1191 -117 4.7 ATGTAAACGTTTTCTC
Staphylococcus haemolyticus JCSC1435 SH1408 -159 5 TTGAAAGCGTTTACTA
Macrococcus caseolyticus JCSC5402 MCCL_0362 -43 5 ATGAAAACGTTTTCTT
Position: -43
Score: 4.7
Sequence: TTGAAAGCCATTTCAT
Locus tag: SE1371
SE1371 -43 4.7 TTGAAAGCCATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: citrate synthase
Staphylococcus aureus subsp. aureus N315 SA1518 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus capitis SK14 STACA0001_0589 -43 4.4 GTGAAAGCCATTTCAT
Staphylococcus epidermidis ATCC 12228 SE1371 -43 4.7 TTGAAAGCCATTTCAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1301 -42 4.7 ATGAAAGCCATTTCAA
Staphylococcus haemolyticus JCSC1435 SH1230 -42 4.4 TTGGAAGCCATTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1071 -42 4.8 ATGAAAGCCATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1362 0 4.4 GTGAAAGCCATTACAT
Position: -152
Score: 4.8
Sequence: TTTAAAACGTTTACAT
Locus tag: SE1374
SE1374 -152 4.8 TTTAAAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase
Staphylococcus aureus subsp. aureus N315 SA1521 -151 4.8 TTTAAAACGTTTACAT
Staphylococcus capitis SK14 STACA0001_0592 -107 4.8 TTTAAAACGTTTACAT
Staphylococcus epidermidis ATCC 12228 SE1374 -152 4.8 TTTAAAACGTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1304 -103 4.6 TATAAAACGTTTACAT
Staphylococcus haemolyticus JCSC1435 SH1226 -152 4.6 TATAAAACGTTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1068 -148 4.8 TTTAAAACGTTTACAT
Macrococcus caseolyticus JCSC5402 MCCL_1365 -100 4.8 TTTAAAACGTTTTCAT
Position: -131
Score: 4.6
Sequence: AATTAAGCGTTTACAT
Locus tag: SE1403
SE1403 -131 4.6 AATTAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptaA
Ortholog function: PTS system N-acetylglucosamine-specific IIBC component
Staphylococcus capitis SK14 STACA0001_0618 -168 4.6 AATAAAACGTTTACAT
-48 4.3 ATGAAAAGCATTTCAA
Staphylococcus epidermidis ATCC 12228 SE1403 -131 4.6 AATTAAGCGTTTACAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1332 -44 4.6 AATAAAACGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1198 -101 3.9 TCAAAAGCGCTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1037 -86 4.1 AGTAAATCGTTTACAT
Position: -71
Score: 4.6
Sequence: AATAAAACGTTTACAA
Locus tag: SE1409
SE1409 -71 4.6 AATAAAACGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: catabolite control protein A
Staphylococcus aureus subsp. aureus N315 SA1557 -71 4.6 AATAAAACGTTTACAA
Staphylococcus capitis SK14 STACA0001_0629 -26 4.3 AATGAAACGCTTACAA
Staphylococcus epidermidis ATCC 12228 SE1409 -71 4.6 AATAAAACGTTTACAA
Staphylococcus haemolyticus JCSC1435 SH1186 -26 4.6 AATAAAACGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1027 -26 4.8 AAGAAATCGTTTTCAA
Macrococcus caseolyticus JCSC5402 MCCL_1413 -25 4.1 AATAAAACGTTTTCAG
Position: -80
Score: 5.1
Sequence: ATGTAAACGCTTTCTT
Locus tag: SE1437
SE1437 -80 5.1 ATGTAAACGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: proline dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA1585 -71 4.7 ATGAAAACGCTTTCTC
Staphylococcus capitis SK14 STACA0001_0658 -81 4.7 ATGTAAACGCTTTCTC
Staphylococcus epidermidis ATCC 12228 SE1437 -80 5.1 ATGTAAACGCTTTCTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1371 -71 4.9 TTGTTAACGTTTTCAT
Staphylococcus haemolyticus JCSC1435 SH1157 -81 5 TTGAAAACGCTTTCTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0999 -80 5 TTGTAAACGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1451 -52 4.9 TTTAAAGCGTTTTCAT
Position: -41
Score: 5
Sequence: ATGTAAGGGCTTACAT
Locus tag: SE1459
SE1459 -41 5 ATGTAAGGGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase
Staphylococcus aureus subsp. aureus N315 SA1609 -44 5 ATGTAAAGGCTTACAT
Staphylococcus capitis SK14 STACA0001_0678 -44 5 ATGTAAAGGCTTACAT
Staphylococcus epidermidis ATCC 12228 SE1459 -41 5 ATGTAAGGGCTTACAT
Staphylococcus haemolyticus JCSC1435 SH1137 -53 4.9 ATGTAAAGGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0975 -43 4.9 TTGTAAAGGCTTACAT
Position: -143
Score: 4.4
Sequence: ATGTATTCGCTTCCAA
Locus tag: SE1723
SE1723 -143 4.4 ATGTATTCGCTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbaA
Ortholog function: fructose-bisphosphate aldolase
Staphylococcus aureus subsp. aureus N315 SA1927 -142 4.5 ATGTATACGTTTGCAT
Staphylococcus capitis SK14 STACA0001_0829 -144 4.3 ATGAATGCGGTTGCAA
Staphylococcus epidermidis ATCC 12228 SE1723 -143 4.4 ATGTATTCGCTTCCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1628 -143 4.8 TTGAATACGTTTTCAT
-102 4.3 TTAAAACCGCTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0759 -101 4.6 ATAAAAACGCTTACAA
Position: -130
Score: 4.7
Sequence: GTGTAATCGTTTTCAA
Locus tag: SE1762
SE1762 -130 4.7 GTGTAATCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA1975
Ortholog function: predicted membrane-bound hydrolase
Staphylococcus aureus subsp. aureus N315 SA1975 -128 5 TTGTAATCGTTTTCAA
Staphylococcus capitis SK14 STACA0001_1306 -131 5 TTGAAATCGTTTTCAA
Staphylococcus epidermidis ATCC 12228 SE1762 -130 4.7 GTGTAATCGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1672 -141 5 TAGAAAACGTTTTCAA
Staphylococcus haemolyticus JCSC1435 SH0869 -129 4.7 GTGTAATCGTTTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0715 -128 4.6 TTGCAATCGTTTTCAA
Position: -62
Score: 4.7
Sequence: TTGAAAACGATTACAC
Locus tag: SE1763
SE1763 -62 4.7 TTGAAAACGATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SAS074
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SAS074 -64 5 TTGAAAACGATTACAA
Staphylococcus capitis SK14 STACA0001_1305 -62 5 TTGAAAACGATTTCAA
Staphylococcus epidermidis ATCC 12228 SE1763 -62 4.7 TTGAAAACGATTACAC
-15 4 AAGGAAGTGTTTTCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1673 -64 5 TTGAAAACGTTTTCTA
Staphylococcus haemolyticus JCSC1435 SH0868 -63 4.7 TTGAAAACGATTACAC
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0714 -64 4.6 TTGAAAACGATTGCAA
Position: -130
Score: 5
Sequence: TTGTAAGCGTTTTCTA
Locus tag: SE1885
SE1885 -130 5 TTGTAAGCGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SA2105
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA2105 -117 4.7 ATGTAAGCGTTTTCCA
Staphylococcus capitis SK14 STACA0001_1178 -131 5 TTGTAAGCGTTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1885 -130 5 TTGTAAGCGTTTTCTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1807 -119 5.1 ATGTAAGCGTTTACTT
Staphylococcus haemolyticus JCSC1435 SH0745 -127 4.7 TTGTAAGCGTTTTCCT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0598 -109 5.1 ATGTAAGCGTTTTCTT
Position: -104
Score: 5
Sequence: ATGTAAGCGTTTACTA
Locus tag: SE1897
SE1897 -104 5 ATGTAAGCGTTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvC
Ortholog function: maltose-specific enzyme IICB of PTS system
Staphylococcus aureus subsp. aureus N315 SA2114 -104 4.7 GTGTAAGCGTTTACTA
Staphylococcus capitis SK14 STACA0001_1166 -113 5 ATGTAAGCGTTTACTA
Staphylococcus epidermidis ATCC 12228 SE1897 -104 5 ATGTAAGCGTTTACTA
Staphylococcus haemolyticus JCSC1435 SH0732 -121 4.7 GTGTAAGCGTTTACTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0583 -117 4.8 ATGTAAGCGTTTCCTT
Position: -109
Score: 5
Sequence: TAGTAAACGCTTACAT
Locus tag: SE1898
SE1898 -109 5 TAGTAAACGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvR
Ortholog function: transcriptional regulator of maltose utilization, RpiR family
Staphylococcus aureus subsp. aureus N315 SA2115 -241 4.7 TAGTAAACGCTTACAC
Staphylococcus capitis SK14 STACA0001_1165 -115 5 TAGTAAACGCTTACAT
Staphylococcus epidermidis ATCC 12228 SE1898 -109 5 TAGTAAACGCTTACAT
Staphylococcus haemolyticus JCSC1435 SH0731 -142 4.3 ATAAAAGCGTTTTCTT
-115 4.7 TAGTAAACGCTTACAC
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0582 -113 4.8 AAGGAAACGCTTACAT
Position: -101
Score: 4.6
Sequence: TTGTAAACACTTACAT
Locus tag: SE1914
SE1914 -101 4.6 TTGTAAACACTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: putative L-ribulokinase
Staphylococcus capitis SK14 STACA0001_1147 -81 4.6 TTGAAAGCCCTATCAT
Staphylococcus epidermidis ATCC 12228 SE1914 -101 4.6 TTGTAAACACTTACAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0563 -73 4.3 ATGTAAGCACTATCAT
Position: -71
Score: 4.1
Sequence: TTTATAAGGTTTACAT
Locus tag: SE1924
SE1924 -71 4.1 TTTATAAGGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltS
Ortholog function: sodium/glutamate symporter
Staphylococcus aureus subsp. aureus N315 SA2135 -64 4.5 TTTATAACGCTTACAT
Staphylococcus capitis SK14 STACA0001_1139 -75 4.5 TTTATAACGCTTACAT
Staphylococcus epidermidis ATCC 12228 SE1924 -71 4.1 TTTATAAGGTTTACAT
Staphylococcus haemolyticus JCSC1435 SH0713 -64 4.5 TTTATAGCGCTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0557 -74 5 TTGTAAACGTTTACTT
Position: -81
Score: 4.4
Sequence: GAGAAAGCGCTTTAAT
Locus tag: SE1943
SE1943 -81 4.4 GAGAAAGCGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mqo
Ortholog function: malate:quinone oxidoreductase
Staphylococcus capitis SK14 STACA0001_1121 -93 4.7 TAGAAAGCGCTTTAAT
Staphylococcus epidermidis ATCC 12228 SE1943 -81 4.4 GAGAAAGCGCTTTAAT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1865 -85 4.5 TAGAAAGCGCTTTCTC
Staphylococcus haemolyticus JCSC1435 SH0693 -77 4.7 AAGAAAGCGTTTTAAT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0539 -90 4.1 TAGAAAACGCTTTACT
Position: -245
Score: 4.4
Sequence: ATTAAAGCGCTTTCTC
Locus tag: SE1944
SE1944 -245 4.4 ATTAAAGCGCTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SE1944
Ortholog function: putative glycosyltransferase
Staphylococcus capitis SK14 STACA0001_1120 -267 4.7 ATTAAAGCGCTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1944 -245 4.4 ATTAAAGCGCTTTCTC
Staphylococcus carnosus subsp. carnosus TM300 Sca_1866 -254 4.5 GAGAAAGCGCTTTCTA
Staphylococcus haemolyticus JCSC1435 SH0692 -248 4.7 ATTAAAACGCTTTCTT
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0538 -318 4.1 AGTAAAGCGTTTTCTA
Position: -58
Score: 4.4
Sequence: TTGGAACCGGTTACAA
Locus tag: SE1959
SE1959 -58 4.4 TTGGAACCGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: PTS system, sucrose-specific IIBC component
Staphylococcus aureus subsp. aureus N315 SA2167 -127 4.6 ATGAATGCGCTATCAA
-61 4.4 TTGGAACCGGTTACAA
Staphylococcus capitis SK14 STACA0001_1097 -63 4.4 TTGGAACCGGTTACAA
-34 4.2 ATGGAACCGGTTTCTA
Staphylococcus epidermidis ATCC 12228 SE1959 -58 4.4 TTGGAACCGGTTACAA
Staphylococcus haemolyticus JCSC1435 SH0671 -63 4.4 TTGGAACCGGTTACAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0512 -66 4.4 TTGGAACCGGTTACAA
Position: -41
Score: 5.1
Sequence: AAGTAAACGCTTTCAT
Locus tag: SE2004
SE2004 -41 5.1 AAGTAAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aapA
Ortholog function: D-serine/D-alanine/glycine transporter
Staphylococcus aureus subsp. aureus N315 SA2226 -54 4.7 AAGAAAACGCTTACAC
Staphylococcus aureus subsp. aureus N315 SA2227 -54 4.7 AAGAAAACGCTTACAC
Staphylococcus capitis SK14 STACA0001_1050 -45 5.1 AAGAAAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE2004 -41 5.1 AAGTAAACGCTTTCAT
Staphylococcus haemolyticus JCSC1435 SH0623 -61 5 AAGAAAGCGTTTACAA
Position: -299
Score: 4.5
Sequence: AAGTAAGCGTTGTCAA
Position: -83
Score: 4.7
Sequence: AAGAAAGCGCTTGCAA
Locus tag: SE2046
SE2046 -299 4.5 AAGTAAGCGTTGTCAA
-83 4.7 AAGAAAGCGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR
Ortholog function: gluconate operon transcriptional repressor
Staphylococcus aureus subsp. aureus N315 SA2295 -79 4.7 AAGAAAGCGCTTGCAA
Staphylococcus capitis SK14 STACA0001_1009 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus epidermidis ATCC 12228 SE2046 -83 4.7 AAGAAAGCGCTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1950 -53 4.7 ATGTAAGCGGTTGCAA
Staphylococcus haemolyticus JCSC1435 SH0574 -81 4.7 AAGAAAGCGTTTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0410 -83 4.6 TTGCAAGCGCTTGCAA
Macrococcus caseolyticus JCSC5402 MCCL_0405 -325 4.6 AcGAAAGCGtTTaCAa
Position: -301
Score: 4.7
Sequence: TTGCAAGCGCTTTCTT
Position: -85
Score: 4.5
Sequence: TTGACAACGCTTACTT
Locus tag: SE2047
SE2047 -301 4.7 TTGCAAGCGCTTTCTT
-85 4.5 TTGACAACGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Staphylococcus aureus subsp. aureus N315 SA0325 -76 4.8 TTGACAACGCTTTCAT
Staphylococcus epidermidis ATCC 12228 SE2047 -85 4.5 TTGACAACGCTTACTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1820 -70 4.3 ATGGAAGCGTTGTCTT
Macrococcus caseolyticus JCSC5402 MCCL_0370 -82 4.7 TTGTAAAGGCTTTCTT
Position: -164
Score: 4.6
Sequence: TTGTAACCGTTTACAC
Locus tag: SE2056
SE2056 -164 4.6 TTGTAACCGTTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gudP
Ortholog function: glucarate transporter
Staphylococcus aureus subsp. aureus N315 SA2300 -148 4.7 TTGTAAACGCTTTCCA
Staphylococcus capitis SK14 STACA0001_1003 -166 4 TTGTAACCGTTTTCGC
Staphylococcus epidermidis ATCC 12228 SE2056 -164 4.6 TTGTAACCGTTTACAC
Staphylococcus carnosus subsp. carnosus TM300 Sca_1960 -94 4.7 TTGTAAACGATTTCTA
Staphylococcus haemolyticus JCSC1435 SH0566 -241 5 TTGAAAACGATTTCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0401 -86 5.1 TTGTAAGCGATTTCAT
Macrococcus caseolyticus JCSC5402 MCCL_1800 -82 4.8 TTGTAATCGATTTCAT
Position: -66
Score: 4.3
Sequence: ATGTAAGCGCATTATT
Locus tag: SE2063
SE2063 -66 4.3 ATGTAAGCGCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: fructose-bisphosphatase
Staphylococcus aureus subsp. aureus N315 SA2304 -83 4.7 ATGTTAACGTTTTCTT
Staphylococcus capitis SK14 STACA0001_0995 -66 4 ATGTAAGCGCATTACT
Staphylococcus epidermidis ATCC 12228 SE2063 -66 4.3 ATGTAAGCGCATTATT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1964 -123 4.8 TTGAAATCGTTTACTT
Staphylococcus haemolyticus JCSC1435 SH0559 -64 4.3 ATGTAAGCGGTTTTAT
Position: -68
Score: 4.8
Sequence: TTGAAATCGCTTTCTT
Locus tag: SE2082
SE2082 -68 4.8 TTGAAATCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfoR
Ortholog function: putative PTS transporter
Staphylococcus aureus subsp. aureus N315 SA2320 -76 5 TTGAAAACGTTTTCTT
Staphylococcus capitis SK14 STACA0001_0978 -221 4.2 ATAATAGCGTTTACAT
-68 4.8 TTGAAATCGCTTTCTT
Staphylococcus epidermidis ATCC 12228 SE2082 -68 4.8 TTGAAATCGCTTTCTT
Staphylococcus carnosus subsp. carnosus TM300 Sca_1981 -79 4.3 TTGAAAACGCTTTACT
Staphylococcus haemolyticus JCSC1435 SH0537 -270 4.9 TTGAAAAGGTTTACAA
-116 4.8 TTGAAATCGTTTTCTT
Position: -87
Score: 4.6
Sequence: GTGTAAGCGTATACAA
Locus tag: SE2088
SE2088 -87 4.6 GTGTAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsU
Ortholog function: ribose transporter RbsU
Staphylococcus aureus subsp. aureus N315 SA0260 -86 4.6 ATGAAAACGCATGCAT
Staphylococcus capitis SK14 STACA0001_0973 -84 4 GTGTAAGCGTATACAG
Staphylococcus epidermidis ATCC 12228 SE2088 -87 4.6 GTGTAAGCGTATACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2421 -101 4.9 ATGAAAGCGTATACAT
Position: -178
Score: 4.6
Sequence: TTGTAAACGCTTTATT
Locus tag: SE2102
SE2102 -178 4.6 TTGTAAACGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glcA
Ortholog function: glucose-specific PTS enzyme IIABC
Staphylococcus aureus subsp. aureus N315 SA0183 -269 4.6 TTGAAAACGCATACTT
Staphylococcus epidermidis ATCC 12228 SE2102 -178 4.6 TTGTAAACGCTTTATT
Staphylococcus haemolyticus JCSC1435 SH0521 -171 4.6 TTGAAAACGCTTTATA
Position: -137
Score: 4.3
Sequence: ATGTAAGCGCTTTACA
Locus tag: SE2109
SE2109 -137 4.3 ATGTAAGCGCTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mvaA
Ortholog function: hydroxymethylglutaryl-CoA reductase
Staphylococcus aureus subsp. aureus N315 SA2333 -147 4.9 TTGTAAGCGTTTTAAT
Staphylococcus capitis SK14 STACA0001_0951 -137 4.3 ATGTAAGCGTTTTACA
Staphylococcus epidermidis ATCC 12228 SE2109 -137 4.3 ATGTAAGCGCTTTACA
Position: -123
Score: 4.3
Sequence: TGTAAAGCGCTTACAT
Locus tag: SE2110
SE2110 -123 4.3 TGTAAAGCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mvaS
Ortholog function: 3-hydroxy-3-methylglutaryl CoA synthase
Staphylococcus aureus subsp. aureus N315 SA2334 -123 4.9 ATTAAAACGCTTACAA
Staphylococcus capitis SK14 STACA0001_0950 -121 4.3 TGTAAAACGCTTACAT
Staphylococcus epidermidis ATCC 12228 SE2110 -123 4.3 TGTAAAGCGCTTACAT
Position: -149
Score: 4.9
Sequence: ATGTAAGCGTTTGCAA
Locus tag: SE2116
SE2116 -149 4.9 ATGTAAGCGTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocA
Ortholog function: 1-pyrroline-5-carboxylate dehydrogenase
Staphylococcus aureus subsp. aureus N315 SA2341 -112 4.7 ATGAAAGCGATTGCAA
Staphylococcus capitis SK14 STACA0001_0943 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus epidermidis ATCC 12228 SE2116 -149 4.9 ATGTAAGCGTTTGCAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0564 -49 4.8 ATGTAAGGGCTTTCTT
Staphylococcus haemolyticus JCSC1435 SH0500 -128 4.7 ATGTAAGCGATTGCAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0311 -101 4.7 ATGTAAGCGATTGCAT
Macrococcus caseolyticus JCSC5402 MCCL_0582 -44 4.7 ATGTAAGGGTTTTCTA
Position: -305
Score: 4.3
Sequence: TGGTAAGCGTATACAT
Locus tag: SE2217
SE2217 -305 4.3 TGGTAAGCGTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: arginine deiminase
Staphylococcus aureus subsp. aureus N315 SA2428 -62 4 ATGtAAGCGtTTgaAg
Staphylococcus capitis SK14 STACA0001_1845 -93 5.1 ATGAAAtCGCTTTCAa
Staphylococcus epidermidis ATCC 12228 SE2217 -304 4.3 tgGtAAGCGtaTaCAT
Position: -45
Score: 4.3
Sequence: ATTAAAGCGTTTTCTC
Locus tag: SE2227
SE2227 -45 4.3 ATTAAAGCGTTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: manR
Ortholog function: antiterminator for mannose operon, BglG family
Staphylococcus aureus subsp. aureus N315 SA2433 -45 4.2 TTAAAAACGCTTACAC
Staphylococcus capitis SK14 STACA0001_1505 -48 4.5 TAGTAAGCGTTTTCCT
Staphylococcus epidermidis ATCC 12228 SE2227 -45 4.3 ATTAAAGCGTTTTCTC
Position: -45
Score: 4.9
Sequence: ATGTATGCGTTTACAA
Locus tag: SE2228
SE2228 -45 4.9 ATGTATGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manP
Ortholog function: PTS system mannose-specific EIIBCA component
Staphylococcus aureus subsp. aureus N315 SA2434 -37 4.3 GAGAATACGCTTACAA
Staphylococcus capitis SK14 STACA0001_1506 -40 4.6 TTGAATACGCTTACAC
Staphylococcus epidermidis ATCC 12228 SE2228 -45 4.9 ATGTATGCGTTTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2440 -39 5 ATGTTAGCGCTTACAA
6 4.3 ATTTTAGCGATTACAT
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