Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO2282 regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: SO2282 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor
Biological process: Amino acid efflux
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_1966
Regulated genes 2
Built upon 23 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -85
Score: 6
Sequence: AAATTGTACACATACAATAA
Locus tag: Swoo_1966
Swoo_1966 -85 6 AAATTGTACACATACAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2282
Ortholog function: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
Shewanella oneidensis MR-1 SO_2282 -83 6.5 ATATTGTACGCATACAATTA
Shewanella putrefaciens CN-32 Sputcn32_2134 -83 6.3 TAATTGTATGCATACATTGT
Shewanella sp W3-18-1 Sputw3181_1877 -98 6.3 TAATTGTATGCATACATTGT
Shewanella sp ANA-3 Shewana3_2266 -59 6.6 AAATTGTACGCATACAATAT
Shewanella sp MR-4 Shewmr4_1753 -82 6.6 AAATTGTACGCATACAATAT
Shewanella sp MR-7 Shewmr7_1833 -83 6.6 AAATTGTACGCATACAATAT
Shewanella baltica OS155 Sbal_2383 -83 6.6 AAATTGTATGCATACATTTA
Shewanella amazonensis SB2B Sama_2016 -87 6.4 AAATTGTATGGATACAATAA
Shewanella pealeana ATCC 700345 Spea_2527 -86 6 GAATTGTATGAGTACAATAC
Shewanella halifaxensis HAW-EB4 Shal_1726 -86 5.7 CAATTGTATGCATACAAAAA
Shewanella piezotolerans WP3 swp_1877 -20 6.4 TTATTGTACGCATACAATTA
Shewanella woodyi ATCC 51908 Swoo_1966 -85 6 AAATTGTACACATACAATAA
Position: -56
Score: 6
Sequence: TTATTGTATGTGTACAATTT
Locus tag: Swoo_1967
Swoo_1967 -56 6 TTATTGTATGTGTACAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2285
Ortholog function: amino acid efflux protein, RhtB family
Shewanella putrefaciens CN-32 Sputcn32_2133 -29 6.3 ACAATGTATGCATACAATTA
Shewanella sp W3-18-1 Sputw3181_1878 -29 6.3 ACAATGTATGCATACAATTA
Shewanella sp ANA-3 Shewana3_2265 -29 6.6 ATATTGTATGCGTACAATTT
Shewanella sp MR-4 Shewmr4_1754 -29 6.6 ATATTGTATGCGTACAATTT
Shewanella sp MR-7 Shewmr7_1834 -29 6.6 ATATTGTATGCGTACAATTT
Shewanella baltica OS155 Sbal_2382 8 6.6 tAAaTGTATGCATACAATTT
Shewanella amazonensis SB2B Sama_2015 -32 6.4 TTATTGTATCCATACAATTT
Shewanella pealeana ATCC 700345 Spea_2526 -98 6 GTATTGTACTCATACAATTC
Shewanella halifaxensis HAW-EB4 Shal_1727 -95 5.7 TTTTTGTATGCATACAATTG
Shewanella piezotolerans WP3 swp_1879 -146 6.4 TAATTGTATGCGTACAATAA
Shewanella woodyi ATCC 51908 Swoo_1967 -56 6 TTATTGTATGTGTACAATTT
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