Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella putrefaciens CN-32

Type Regulator Effector Pathway Genes Sites
TF AraR Arabinose Arabinose utilization 4 4
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 27 57
TF AzrR Paraquat Superoxide stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 208 422
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF CueR2 Copper ion, (Cu+) Copper resistance 1 1
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 6
TF Fnr Oxygen Anaerobic metabolism 31 39
TF Fur Iron ion, (Fe2+) Iron homeostasis 38 43
TF GcvA Glycine Glycine metabolism 7 7
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 19 28
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 1 1
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 5
TF LexA DNA damage SOS response 9 11
TF LiuR Branched-chain amino acid degradation 7 9
TF LldR L-lactate Lactate utilization 1 1
TF MetR Homocysteine Methionine biosynthesis 4 7
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 3 3
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 16 22
TF NhaR Potassium ion Osmotic stress response 2 2
TF NorR Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 2 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 6
TF PdhR Pyruvate Pyruvate metabolism 6 6
TF PflR Formate Formate metabolism 3 3
TF PnuR NAD biosynthesis 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 16 18
TF PUR Purine metabolism 4 4
TF SdaR Glycerate Glycerate utilization 1 1
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO0734 1 1
TF SO1703 Multidrug resistance 1 1
TF SO1758 1 1
TF SO2282 Amino acid efflux 2 2
TF SO3277 Multidrug resistance 2 2
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 1 1
TF SO3393 Drug resistance 2 2
TF SO3494 Multidrug resistance 2 4
TF SO4468 2 2
TF SO4705 2 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 23 32
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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