Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ykoC gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Actinobacteria
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bifidobacterium adolescentis ATCC 15703
Position: -135
Score: 55.85
Sequence: CAGGCGCAGACACGG...
Locus tag: BAD_0950
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BAD_0949
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BAD_0948
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -135 55.8 CAGGCGCAGACACGG... BAD_0950
Bifidobacterium angulatum DSM 20098
Position: -125
Score: 46.26
Sequence: GGCAATGACACGGGA...
Locus tag: BIFANG_01019
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFANG_01020
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFANG_01021
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -125 46.3 GGCAATGACACGGGA... BIFANG_01019
Bifidobacterium breve DSM 20213
Position: -170
Score: 46.26
Sequence: GGAGTTGACACGGGA...
Locus tag: BIFBRE_00957
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00958
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00959
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -170 46.3 GGAGTTGACACGGGA... BIFBRE_00957
Bifidobacterium dentium Bd1
Position: -134
Score: 55.9
Sequence: CTGTCACAGACACGG...
Locus tag: BDP_1328
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BDP_1327
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BDP_1326
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -134 55.9 CTGTCACAGACACGG... BDP_1328
Bifidobacterium longum NCC2705
Position: -212
Score: 47.99
Sequence: GGGAGTTGACACGGG...
Locus tag: BL1071
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BL1070
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BL1069
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -212 48 GGGAGTTGACACGGG... BL1071