Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rpmA gene

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus acidophilus NCFM
Position: -95
Score: 61.15
Sequence: TCCACATCTGCAACC...
Locus tag: LBA1338
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LBA1337
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -95 61.2 TCCACATCTGCAACC... LBA1338
Lactobacillus brevis ATCC 367
Position: -99
Score: 61.41
Sequence: TCCACAGCTGCAACC...
Locus tag: LVIS_0985
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LVIS_0984
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LVIS_0983
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -99 61.4 TCCACAGCTGCAACC... LVIS_0985
Lactobacillus casei ATCC 334
Position: -101
Score: 45.19
Sequence: CCCTCCTATGCAACC...
Locus tag: LSEI_1646
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LSEI_1645
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LSEI_1644
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -101 45.2 CCCTCCTATGCAACC... LSEI_1646
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Position: -94
Score: 62.24
Sequence: CTCGATTCTGCAACC...
Locus tag: LBUL_1326
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LBUL_1325
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -94 62.2 CTCGATTCTGCAACC... LBUL_1326
Lactobacillus fermentum IFO 3956
Position: -83
Score: 50.39
Sequence: CCCACAACTACAACC...
Locus tag: LAF_1269
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LAF_1268
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LAF_1267
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -83 50.4 CCCACAACTACAACC... LAF_1269
Lactobacillus helveticus DPC 4571
Position: -96
Score: 57.44
Sequence: TCCACATCTGCAACC...
Locus tag: lhv_1424
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: lhv_1423
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -96 57.4 TCCACATCTGCAACC... lhv_1424
Lactobacillus johnsonii NCC 533
Position: -96
Score: 60.19
Sequence: CTCACATCTGCAACC...
Locus tag: LJ1556
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LJ1555
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -96 60.2 CTCACATCTGCAACC... LJ1556
Lactobacillus plantarum WCFS1
Position: -95
Score: 53.9
Sequence: TACAGCTACAACCGC...
Locus tag: lp_1592
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: lp_1593
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: lp_1594
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -95 53.9 TACAGCTACAACCGC... lp_1592
Lactobacillus reuteri JCM 1112
Position: -89
Score: 50.62
Sequence: CCAACAACTACAACC...
Locus tag: LAR_1124
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LAR_1123
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LAR_1122
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -89 50.6 CCAACAACTACAACC... LAR_1124
Lactobacillus rhamnosus GG
Position: -100
Score: 42.6
Sequence: CCCTCCTATGCAACC...
Locus tag: LGG_01690
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LGG_01689
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LGG_01688
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -100 42.6 CCCTCCTATGCAACC... LGG_01690
Lactobacillus sakei subsp. sakei 23K
Position: -88
Score: 62.63
Sequence: CACAGCTGCAACCGC...
Locus tag: LSA0670
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LSA0671
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LSA0672
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -88 62.6 CACAGCTGCAACCGC... LSA0670
Lactobacillus salivarius subsp. salivarius UCC118
Position: -95
Score: 59.04
Sequence: ATCACATCTGCAACC...
Locus tag: LSL_0956
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LSL_0955
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: LSL_0954
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -95 59 ATCACATCTGCAACC... LSL_0956
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -96
Score: 46.27
Sequence: AGCATAGCTACAACC...
Locus tag: LEUM_1326
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: LEUM_1325
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -96 46.3 AGCATAGCTACAACC... LEUM_1326
Oenococcus oeni PSU-1
Position: -75
Score: 38.82
Sequence: CAATGCTTCAACCAC...
Locus tag: OEOE_0957
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: OEOE_0958
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-rpmA -75 38.8 CAATGCTTCAACCAC... OEOE_0957
Pediococcus pentosaceus ATCC 25745
Position: -79
Score: 57.93
Sequence: CCACGCTACAACCGC...
Locus tag: PEPE_0811
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: PEPE_0812
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: PEPE_0813
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -79 57.9 CCACGCTACAACCGC... PEPE_0811