Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pyrD gene

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus casei ATCC 334
Position: -325
Score: 56.83
Sequence: AAGCACCTTTAACTA...
Locus tag: LSEI_1457
Name: pyrR
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: LSEI_1456
Name: pyrP
Funciton: Xanthine/uracil permease
Locus tag: LSEI_1455
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LSEI_1454
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LSEI_1453
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LSEI_1452
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LSEI_1451
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: LSEI_1450
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LSEI_1449
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrR-pyrP-pyrB-pyrC-carA-carB-pyrD-pyrF-pyrE -325 56.8 AAGCACCTTTAACTA... LSEI_1457
Lactobacillus fermentum IFO 3956
Position: -269
Score: 59.04
Sequence: GATGTCCTTTAAGCT...
Position: -146
Score: 38.41
Sequence: ATAAACCATCAAATT...
Locus tag: LAF_1205
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LAF_1204
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LAF_1203
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LAF_1202
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LAF_1201
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrB-pyrC-carA-carB-pyrD -269 59 GATGTCCTTTAAGCT... LAF_1205
-146 38.4 ATAAACCATCAAATT...
Lactobacillus plantarum WCFS1
Position: -136
Score: 42.7
Sequence: TAAAACCATTTAATT...
Locus tag: lp_2703
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: lp_2702
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: lp_2701
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: lp_2700
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: lp_2699
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: lp_2698
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: lp_2697
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrD-pyrF-pyrE -136 42.7 TAAAACCATTTAATT... lp_2703
Lactobacillus reuteri JCM 1112
Position: -292
Score: 59.56
Sequence: ATACCTTTAACTTAG...
Position: -148
Score: 40.0
Sequence: CGACCATTTAATTGT...
Locus tag: LAR_0117
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LAR_0118
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LAR_0119
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: LAR_0120
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LAR_0121
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-pyrD-pyrF-pyrE -292 59.6 ATACCTTTAACTTAG... LAR_0117
-148 40 CGACCATTTAATTGT...
Lactobacillus rhamnosus GG
Position: -466
Score: 60.16
Sequence: AAGCACCTTTAACTA...
Locus tag: LGG_01461
Name: pyrR
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: LGG_01460
Name: pyrP
Funciton: Xanthine/uracil permease
Locus tag: LGG_01459
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LGG_01458
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LGG_01457
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LGG_01456
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LGG_01455
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: LGG_01454
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LGG_01453
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrR-pyrP-pyrB-pyrC-carA-carB-pyrD-pyrF-pyrE -466 60.2 AAGCACCTTTAACTA... LGG_01461
Lactobacillus sakei subsp. sakei 23K
Position: -169
Score: 41.02
Sequence: GAACCGTTTAATTGT...
Locus tag: LSA0951
Name: pyrP
Funciton: Xanthine/uracil permease
Locus tag: LSA0952
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LSA0953
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LSA0954
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LSA0955
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LSA0956
Name: pyrK
Funciton: Dihydroorotate oxidase, electron transfer subunit
Locus tag: LSA0957
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: LSA0958
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LSA0959
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrP-pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -169 41 GAACCGTTTAATTGT... LSA0951
Lactobacillus salivarius subsp. salivarius UCC118
Position: -303
Score: 48.27
Sequence: AAACCTTTAAGAATA...
Position: -135
Score: 37.74
Sequence: AAACCATTTAATTGT...
Locus tag: LSL_0190
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LSL_0191
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LSL_0192
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LSL_0193
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LSL_0194
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrB-pyrC-carA-carB-pyrD -303 48.3 AAACCTTTAAGAATA... LSL_0190
-135 37.7 AAACCATTTAATTGT...
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