Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ykoC gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Actinobacteria
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Corynebacterium aurimucosum ATCC 700975
Position: -166
Score: 50.36
Sequence: CACATCGTCACGGGT...
Locus tag: cauri_0372
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cauri_0373
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cauri_0374
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cauri_0375
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK -166 50.4 CACATCGTCACGGGT... cauri_0372
Corynebacterium diphtheriae NCTC 13129
Position: -106
Score: 59.46
Sequence: CGAGATGCCCGGGTG...
Locus tag: DIP0953
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: DIP0954
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: DIP0955
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoD-ykoC-hmpK -106 59.5 CGAGATGCCCGGGTG... DIP0953
Corynebacterium efficiens YS-314
Position: -98
Score: 60.62
Sequence: CGATATTGCACGGGT...
Locus tag: CE1134
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: CE1135
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: CE1136
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: CE1137
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK -98 60.6 CGATATTGCACGGGT... CE1134
Corynebacterium glutamicum ATCC 13032
Position: -100
Score: 51.03
Sequence: TTCATAGACACGGGT...
Locus tag: cg1227
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cg1228
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cg1229
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cg1230
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK -100 51 TTCATAGACACGGGT... cg1227
Corynebacterium kroppenstedtii DSM 44385
Position: -163
Score: 47.6
Sequence: CAGTACTTCGCGGGA...
Locus tag: ckrop_0610
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: ckrop_0611
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: ckrop_0612
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: ckrop_0613
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK -163 47.6 CAGTACTTCGCGGGA... ckrop_0610
Corynebacterium urealyticum DSM 7109
Position: -108
Score: 37.2
Sequence: CCGACCAACGCGGGA...
Locus tag: cur_0414
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cur_0415
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cur_0416
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: cur_0417
Name: hmpK
Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK -108 37.2 CCGACCAACGCGGGA... cur_0414