Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ykoD gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Anoxybacillus flavithermus WK1
Position: -196
Score: 90.59
Sequence: TGTATTCCACTAGGG...
Locus tag: Aflv_2320
Name: tenA
Funciton: 4-amino-5-aminomethyl-2-methylpyrimidine hydrolase TenA
Locus tag: Aflv_2319
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: Aflv_2318
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: Aflv_2317
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: Aflv_2316
Name: tenI
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: Aflv_2315
Name: thiO
Funciton: Glycine oxidase ThiO (EC 1.4.3.19)
Locus tag: Aflv_2314
Name: thiS
Funciton: Sulfur carrier protein ThiS
Locus tag: Aflv_2313
Name: thiG
Funciton: Thiazole synthase ThiG
Locus tag: Aflv_2312
Name: thiF
Funciton: Sulfur carrier protein adenylyltransferase ThiF
Locus tag: Aflv_2311
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
tenA-ykoE-ykoD-ykoC-tenI-thiO-thiS-thiG-thiF-thiD -196 90.6 TGTATTCCACTAGGG... Aflv_2320
Bacillus amyloliquefaciens FZB42
Position: -294
Score: 80.77
Sequence: GGAAACGCACTAGGG...
Locus tag: RBAM_013090
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: RBAM_013080
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: RBAM_013070
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -294 80.8 GGAAACGCACTAGGG... RBAM_013090
Bacillus clausii KSM-K16
Position: -200
Score: 74.06
Sequence: ACAACCACTAGGGGT...
Locus tag: ABC1933
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: ABC1934
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: ABC1935
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -200 74.1 ACAACCACTAGGGGT... ABC1933
Bacillus licheniformis DSM 13
Position: -217
Score: 86.0
Sequence: GGAAGTCCACTAGGG...
Locus tag: BLi04205
Name: tenA
Funciton: 4-amino-5-aminomethyl-2-methylpyrimidine hydrolase TenA
Locus tag: BLi04204
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BLi04203
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BLi04202
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
tenA-ykoE-ykoD-ykoC -217 86 GGAAGTCCACTAGGG... BLi04205
Bacillus pumilus SAFR-032
Position: -192
Score: 80.36
Sequence: AAAAGTCCACTAGGG...
Locus tag: BPUM_3574
Name: tenA
Funciton: 4-amino-5-aminomethyl-2-methylpyrimidine hydrolase TenA
Locus tag: BPUM_3573
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BPUM_3572
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BPUM_3571
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
tenA-ykoE-ykoD-ykoC -192 80.4 AAAAGTCCACTAGGG... BPUM_3574
Bacillus subtilis subsp. subtilis str. 168
Position: -210
Score: 74.93
Sequence: CGGAAAGCACTAGGG...
Locus tag: BSU13240
Name: ykoF
Funciton: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BSU13230
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BSU13220
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BSU13210
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoF-ykoE-ykoD-ykoC -210 74.9 CGGAAAGCACTAGGG... BSU13240
Geobacillus kaustophilus HTA426
Position: -213
Score: 90.67
Sequence: TCATCCACTAGGGGG...
Locus tag: GK0618
Name: tenA
Funciton: 4-amino-5-aminomethyl-2-methylpyrimidine hydrolase TenA
Locus tag: GK0619
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: GK0620
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: GK0621
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: GK0622
Name: tenI
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: GK0623
Name: thiO
Funciton: Glycine oxidase ThiO (EC 1.4.3.19)
Locus tag: GK0624
Name: thiS
Funciton: Sulfur carrier protein ThiS
Locus tag: GK0625
Name: thiG
Funciton: Thiazole synthase ThiG
Locus tag: GK0626
Name: thiF
Funciton: Sulfur carrier protein adenylyltransferase ThiF
tenA-ykoE-ykoD-ykoC-tenI-thiO-thiS-thiG-thiF -213 90.7 TCATCCACTAGGGGG... GK0618
Oceanobacillus iheyensis HTE831
Position: -197
Score: 80.64
Sequence: TCGTACGCACTAGGG...
Locus tag: OB0806
Name: ykoF
Funciton: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: OB0805
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: OB0804
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: OB0803
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoF-ykoE-ykoD-ykoC -197 80.6 TCGTACGCACTAGGG... OB0806
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