Orthologous regulated operons containing pyrK gene
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||||
|
Position: -150
Score: 50.43 Sequence: ATAAACCTTTAATTA...
Locus tag: CAC2654
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CAC2653
Name: pyrI Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CAC2652
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CAC2651
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CAC2650
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
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| pyrB-pyrI-pyrF-pyrK-pyrD | -150 | 50.4 | ATAAACCTTTAATTA... | CAC2654 |
| Clostridium bartlettii DSM 16795 | ||||
|
Position: -47
Score: 33.05 Sequence: AATAACTTTTAATTT...
Locus tag: CLOBAR_00677
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CLOBAR_00676
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CLOBAR_00675
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CLOBAR_00674
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrK-pyrD-pyrE | -47 | 33 | AATAACTTTTAATTT... | CLOBAR_00677 |
| Clostridium beijerincki NCIMB 8052 | ||||
|
Position: -165
Score: 37.43 Sequence: TAACCTTTAATTTGA...
Locus tag: Cbei_1000
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Cbei_1001
Name: pyrI Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: Cbei_1002
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Cbei_1003
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Cbei_1004
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Cbei_1005
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Cbei_1006
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE | -165 | 37.4 | TAACCTTTAATTTGA... | Cbei_1000 |
| Clostridium botulinum A str. ATCC 3502 | ||||
|
Position: -195
Score: 37.0 Sequence: TAAGACCTTTAAAAT...
Locus tag: CBO3241
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CBO3240
Name: pyrI Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CBO3239
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CBO3238
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CBO3237
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CBO3236
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CBO3235
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE | -195 | 37 | TAAGACCTTTAAAAT... | CBO3241 |
| Clostridium butyricum 5521 | ||||
|
Position: -158
Score: 37.04 Sequence: AATAACCTTTAATTT...
Locus tag: CBY_2768
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CBY_2767
Name: pyrI Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CBY_2766
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CBY_2765
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CBY_2764
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CBY_2763
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CBY_2762
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE | -158 | 37 | AATAACCTTTAATTT... | CBY_2768 |
| Clostridium cellulolyticum H10 | ||||
|
Position: -200
Score: 45.53 Sequence: TTACCTTTAAATTAG...
Locus tag: Ccel_0611
Name: pyrR Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: Ccel_0612
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Ccel_0613
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Ccel_0614
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Ccel_0615
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Ccel_0616
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Ccel_0617
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Ccel_0618
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
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| pyrR-pyrB-pyrC-pyrF-carA-carB-pyrK-pyrD | -200 | 45.5 | TTACCTTTAAATTAG... | Ccel_0611 |
| Clostridium difficile 630 | ||||
|
Position: -46
Score: 27.81 Sequence: ATACTTTTAATTTTA...
Locus tag: CD0184
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CD0185
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CD0186
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CD0187
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrB-pyrK-pyrD-pyrE | -46 | 27.8 | ATACTTTTAATTTTA... | CD0184 |
| Clostridium hiranonis DSM 13275 | ||||
|
Position: -47
Score: 25.16 Sequence: ATAGCTTTAAATTCG...
Locus tag: CLOHIR_00048
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CLOHIR_00049
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CLOHIR_00050
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
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| pyrB-pyrK-pyrD | -47 | 25.2 | ATAGCTTTAAATTCG... | CLOHIR_00048 |
| Clostridium kluyveri DSM 555 | ||||
|
Position: -151
Score: 45.53 Sequence: CTGAACCTTTAAGAC...
Locus tag: CKL_3361
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CKL_3360
Name: pyrI Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CKL_3359
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CKL_3358
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CKL_3357
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CKL_3356
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CKL_3355
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE | -151 | 45.5 | CTGAACCTTTAAGAC... | CKL_3361 |
| Clostridium novyi NT | ||||
|
Position: -180
Score: 33.25 Sequence: GCGTGCCTTTAATTC...
Locus tag: NT01CX_0395
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: NT01CX_0394
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: NT01CX_0393
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: NT01CX_0392
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: NT01CX_0391
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: NT01CX_0390
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrB-pyrC-pyrF-pyrK-pyrD-pyrE | -180 | 33.2 | GCGTGCCTTTAATTC... | NT01CX_0395 |
| Clostridium perfringens ATCC 13124 | ||||
|
Position: -180
Score: 46.94 Sequence: AATAACCTTTAAATT...
Locus tag: CPF_1387
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CPF_1385
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CPF_1384
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CPF_1383
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CPF_1382
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CPF_1381
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrB-pyrC-pyrF-pyrK-pyrD-pyrE | -180 | 46.9 | AATAACCTTTAAATT... | CPF_1387 |
| Clostridium sp. OhILAs | ||||
|
Position: -494
Score: 33.47 Sequence: GTCGACCTTTAAGAA...
Locus tag: Clos_2194
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Clos_2193
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Clos_2192
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Clos_2191
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Clos_2190
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrC-pyrF-pyrK-pyrD-pyrE | -494 | 33.5 | GTCGACCTTTAAGAA... | Clos_2194 |