Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing carB gene

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -422
Score: 46.91
Sequence: ATATACCTTTAATGA...
Locus tag: CAC2645
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CAC2644
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -422 46.9 ATATACCTTTAATGA... CAC2645
Clostridium bartlettii DSM 16795
Position: -141
Score: 54.61
Sequence: AAGTCTTTTAAAATA...
Locus tag: CLOBAR_00209
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CLOBAR_00210
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CLOBAR_00211
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB -141 54.6 AAGTCTTTTAAAATA... CLOBAR_00209
Clostridium beijerincki NCIMB 8052
Position: -232
Score: 33.88
Sequence: TACACTTTAACTTGG...
Locus tag: Cbei_0028
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Cbei_0029
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -232 33.9 TACACTTTAACTTGG... Cbei_0028
Clostridium butyricum 5521
Position: -225
Score: 29.02
Sequence: GATGCACTTTAACTT...
Locus tag: CBY_2289
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CBY_2288
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -225 29 GATGCACTTTAACTT... CBY_2289
Clostridium cellulolyticum H10
Position: -200
Score: 45.53
Sequence: TTACCTTTAAATTAG...
Locus tag: Ccel_0611
Name: pyrR
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: Ccel_0612
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Ccel_0613
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Ccel_0614
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Ccel_0615
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Ccel_0616
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Ccel_0617
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Ccel_0618
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrR-pyrB-pyrC-pyrF-carA-carB-pyrK-pyrD -200 45.5 TTACCTTTAAATTAG... Ccel_0611
Clostridium difficile 630
Position: -261
Score: 32.62
Sequence: AAATTCCTTAAAGTA...
Position: -146
Score: 52.01
Sequence: AAAGTCTTTTAAACT...
Locus tag: CD3592
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CD3591
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CD3590
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: CD3589
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CD3588
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB-carA-carB -261 32.6 AAATTCCTTAAAGTA... CD3592
-146 52 AAAGTCTTTTAAACT...
Clostridium hiranonis DSM 13275
Position: -106
Score: 47.31
Sequence: AGTCTTTTAAGCTAG...
Locus tag: CLOHIR_02208
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CLOHIR_02209
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CLOHIR_02210
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB -106 47.3 AGTCTTTTAAGCTAG... CLOHIR_02208
Clostridium kluyveri DSM 555
Position: -216
Score: 31.49
Sequence: TACACTTTAAATTGG...
Locus tag: CKL_0649
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CKL_0650
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -216 31.5 TACACTTTAAATTGG... CKL_0649
Clostridium novyi NT
Position: -365
Score: 35.64
Sequence: AAAGTCCTTTAAGGT...
Position: -245
Score: 50.86
Sequence: ATTAACCTTTAATTT...
Locus tag: NT01CX_0383
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: NT01CX_0382
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -365 35.6 AAAGTCCTTTAAGGT... NT01CX_0383
-245 50.9 ATTAACCTTTAATTT...
Clostridium perfringens ATCC 13124
Position: -283
Score: 29.2
Sequence: AATACACTTTAAATT...
Locus tag: CPF_2898
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CPF_2897
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
carA-carB -283 29.2 AATACACTTTAAATT... CPF_2898
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