Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pyrF gene

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -150
Score: 50.43
Sequence: ATAAACCTTTAATTA...
Locus tag: CAC2654
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CAC2653
Name: pyrI
Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CAC2652
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CAC2651
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CAC2650
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrB-pyrI-pyrF-pyrK-pyrD -150 50.4 ATAAACCTTTAATTA... CAC2654
Clostridium bartlettii DSM 16795
Position: -141
Score: 54.61
Sequence: AAGTCTTTTAAAATA...
Locus tag: CLOBAR_00209
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CLOBAR_00210
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CLOBAR_00211
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB -141 54.6 AAGTCTTTTAAAATA... CLOBAR_00209
Clostridium beijerincki NCIMB 8052
Position: -165
Score: 37.43
Sequence: TAACCTTTAATTTGA...
Locus tag: Cbei_1000
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Cbei_1001
Name: pyrI
Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: Cbei_1002
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Cbei_1003
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Cbei_1004
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Cbei_1005
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Cbei_1006
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE -165 37.4 TAACCTTTAATTTGA... Cbei_1000
Clostridium botulinum A str. ATCC 3502
Position: -195
Score: 37.0
Sequence: TAAGACCTTTAAAAT...
Locus tag: CBO3241
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CBO3240
Name: pyrI
Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CBO3239
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CBO3238
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CBO3237
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CBO3236
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CBO3235
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE -195 37 TAAGACCTTTAAAAT... CBO3241
Clostridium butyricum 5521
Position: -158
Score: 37.04
Sequence: AATAACCTTTAATTT...
Locus tag: CBY_2768
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CBY_2767
Name: pyrI
Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CBY_2766
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CBY_2765
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CBY_2764
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CBY_2763
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CBY_2762
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE -158 37 AATAACCTTTAATTT... CBY_2768
Clostridium cellulolyticum H10
Position: -200
Score: 45.53
Sequence: TTACCTTTAAATTAG...
Locus tag: Ccel_0611
Name: pyrR
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: Ccel_0612
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Ccel_0613
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Ccel_0614
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Ccel_0615
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Ccel_0616
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Ccel_0617
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Ccel_0618
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrR-pyrB-pyrC-pyrF-carA-carB-pyrK-pyrD -200 45.5 TTACCTTTAAATTAG... Ccel_0611
Clostridium difficile 630
Position: -261
Score: 32.62
Sequence: AAATTCCTTAAAGTA...
Position: -146
Score: 52.01
Sequence: AAAGTCTTTTAAACT...
Locus tag: CD3592
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CD3591
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CD3590
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: CD3589
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CD3588
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB-carA-carB -261 32.6 AAATTCCTTAAAGTA... CD3592
-146 52 AAAGTCTTTTAAACT...
Clostridium hiranonis DSM 13275
Position: -106
Score: 47.31
Sequence: AGTCTTTTAAGCTAG...
Locus tag: CLOHIR_02208
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CLOHIR_02209
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: CLOHIR_02210
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF-carA-carB -106 47.3 AGTCTTTTAAGCTAG... CLOHIR_02208
Clostridium kluyveri DSM 555
Position: -151
Score: 45.53
Sequence: CTGAACCTTTAAGAC...
Locus tag: CKL_3361
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CKL_3360
Name: pyrI
Funciton: Aspartate carbamoyltransferase regulatory chain (PyrI)
Locus tag: CKL_3359
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CKL_3358
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CKL_3357
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CKL_3356
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CKL_3355
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrI-pyrC-pyrF-pyrK-pyrD-pyrE -151 45.5 CTGAACCTTTAAGAC... CKL_3361
Clostridium novyi NT
Position: -180
Score: 33.25
Sequence: GCGTGCCTTTAATTC...
Locus tag: NT01CX_0395
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: NT01CX_0394
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: NT01CX_0393
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: NT01CX_0392
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: NT01CX_0391
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: NT01CX_0390
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-pyrF-pyrK-pyrD-pyrE -180 33.2 GCGTGCCTTTAATTC... NT01CX_0395
Clostridium perfringens ATCC 13124
Position: -180
Score: 46.94
Sequence: AATAACCTTTAAATT...
Locus tag: CPF_1387
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: CPF_1385
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: CPF_1384
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: CPF_1383
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: CPF_1382
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: CPF_1381
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-pyrF-pyrK-pyrD-pyrE -180 46.9 AATAACCTTTAAATT... CPF_1387
Clostridium sp. OhILAs
Position: -494
Score: 33.47
Sequence: GTCGACCTTTAAGAA...
Locus tag: Clos_2194
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Clos_2193
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Clos_2192
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Clos_2191
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Clos_2190
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrC-pyrF-pyrK-pyrD-pyrE -494 33.5 GTCGACCTTTAAGAA... Clos_2194
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