Orthologous regulated operons containing rpmI gene
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||||
|
Position: -149
Score: 57.52 Sequence: AGTATTGAAGAAGAA...
Locus tag: CAC2361
Name: infC Funciton: Translation initiation factor 3
Locus tag: CAC2360
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CAC2359
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -149 | 57.5 | AGTATTGAAGAAGAA... | CAC2361 |
| Clostridium bartlettii DSM 16795 | ||||
|
Position: -249
Score: 25.99 Sequence: AACAGTAAAGAAGAA...
Locus tag: CLOBAR_01302
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOBAR_01301
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOBAR_01300
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -249 | 26 | AACAGTAAAGAAGAA... | CLOBAR_01302 |
| Clostridium beijerincki NCIMB 8052 | ||||
|
Position: -104
Score: 42.82 Sequence: ATGTTAAGAAGAAAC...
Locus tag: Cbei_1569
Name: infC Funciton: Translation initiation factor 3
Locus tag: Cbei_1570
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: Cbei_1571
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -104 | 42.8 | ATGTTAAGAAGAAAC... | Cbei_1569 |
| Clostridium bolteae ATCC BAA-613 | ||||
|
Position: -240
Score: 16.05 Sequence: GACAGGAAAGCAGGT...
Locus tag: CLOBOL_05438
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOBOL_05437
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOBOL_05436
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -240 | 16 | GACAGGAAAGCAGGT... | CLOBOL_05438 |
| Clostridium botulinum A str. ATCC 3502 | ||||
|
Position: -162
Score: 54.1 Sequence: TTTATGTAAGTAGAA...
Locus tag: CBO3137
Name: infC Funciton: Translation initiation factor 3
Locus tag: CBO3136
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CBO3135
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -162 | 54.1 | TTTATGTAAGTAGAA... | CBO3137 |
| Clostridium cellulolyticum H10 | ||||
|
Position: -220
Score: 41.65 Sequence: AAAACAAGAAGAAGT...
Locus tag: Ccel_1311
Name: infC Funciton: Translation initiation factor 3
Locus tag: Ccel_1312
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: Ccel_1313
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -220 | 41.7 | AAAACAAGAAGAAGT... | Ccel_1311 |
| Clostridium difficile 630 | ||||
|
Position: -163
Score: 31.86 Sequence: AAACAAAGAAGAAGT...
Locus tag: CD0685
Name: infC Funciton: Translation initiation factor 3
Locus tag: CD0686
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CD0687
Name: rplT Funciton: LSU ribosomal protein L20p |
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| infC-rpmI-rplT | -163 | 31.9 | AAACAAAGAAGAAGT... | CD0685 |
| Clostridium hiranonis DSM 13275 | ||||
|
Position: -246
Score: 35.07 Sequence: ACAGCAAGTAGAAAT...
Locus tag: CLOHIR_01892
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOHIR_01893
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOHIR_01894
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -246 | 35.1 | ACAGCAAGTAGAAAT... | CLOHIR_01892 |
| Clostridium kluyveri DSM 555 | ||||
|
Position: -190
Score: 58.76 Sequence: AAACGTTAAGAAGAA...
Locus tag: CKL_3195
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CKL_3194
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| rpmI-rplT | -190 | 58.8 | AAACGTTAAGAAGAA... | CKL_3195 |
| Clostridium leptum DSM 753 | ||||
|
Position: -79
Score: 34.51 Sequence: TACAACAAAGCAGAG...
Locus tag: CLOLEP_03303
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOLEP_03302
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOLEP_03301
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -79 | 34.5 | TACAACAAAGCAGAG... | CLOLEP_03303 |
| Clostridium nexile DSM 1787 | ||||
|
Position: -210
Score: 31.1 Sequence: AAAAAGAAAGCAGAG...
Locus tag: CLONEX_02671
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLONEX_02670
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLONEX_02669
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -210 | 31.1 | AAAAAGAAAGCAGAG... | CLONEX_02671 |
| Clostridium novyi NT | ||||
|
Position: -316
Score: 61.85 Sequence: TCGTTAAGAAGAAAC...
Locus tag: NT01CX_1761
Name: infC Funciton: Translation initiation factor 3
Locus tag: NT01CX_1762
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: NT01CX_1763
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -316 | 61.8 | TCGTTAAGAAGAAAC... | NT01CX_1761 |
| Clostridium perfringens ATCC 13124 | ||||
|
Position: -150
Score: 70.05 Sequence: TGATGTCAAGAAGAA...
Locus tag: CPF_2146
Name: infC Funciton: Translation initiation factor 3
Locus tag: CPF_2145
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CPF_2144
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -150 | 70.1 | TGATGTCAAGAAGAA... | CPF_2146 |
| Clostridium phytofermentans ISDg | ||||
|
Position: -218
Score: 26.51 Sequence: ATAGCAAGTAGAGTA...
Locus tag: null
Name: infC Funciton: Translation initiation factor 3
Locus tag: null
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: null
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -218 | 26.5 | ATAGCAAGTAGAGTA... | null |
| Clostridium scindens ATCC 35704 | ||||
|
Position: -171
Score: 24.39 Sequence: AAACAAAGTAGAGTA...
Locus tag: CLOSCI_01277
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOSCI_01278
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOSCI_01279
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -171 | 24.4 | AAACAAAGTAGAGTA... | CLOSCI_01277 |
| Clostridium sp. L2-50 | ||||
|
Position: -156
Score: 50.66 Sequence: CAAGAAAGCAGAGTA...
Locus tag: CLOL250_00814
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOL250_00815
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOL250_00816
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -156 | 50.7 | CAAGAAAGCAGAGTA... | CLOL250_00814 |
| Clostridium sp. OhILAs | ||||
|
Position: -271
Score: 35.57 Sequence: GTAAACAAAGAAGAA...
Locus tag: Clos_1978
Name: infC Funciton: Translation initiation factor 3
Locus tag: Clos_1977
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: Clos_1976
Name: rplT Funciton: LSU ribosomal protein L20p |
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| infC-rpmI-rplT | -271 | 35.6 | GTAAACAAAGAAGAA... | Clos_1978 |
| Clostridium sp. SS2/1 | ||||
|
Position: -92
Score: 29.56 Sequence: CAACAAAGAAGAGTA...
Locus tag: CLOSS21_02197
Name: infC Funciton: Translation initiation factor 3
Locus tag: CLOSS21_02198
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: CLOSS21_02199
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -92 | 29.6 | CAACAAAGAAGAGTA... | CLOSS21_02197 |