Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rpmI gene

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -149
Score: 57.52
Sequence: AGTATTGAAGAAGAA...
Locus tag: CAC2361
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CAC2360
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CAC2359
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -149 57.5 AGTATTGAAGAAGAA... CAC2361
Clostridium bartlettii DSM 16795
Position: -249
Score: 25.99
Sequence: AACAGTAAAGAAGAA...
Locus tag: CLOBAR_01302
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOBAR_01301
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOBAR_01300
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -249 26 AACAGTAAAGAAGAA... CLOBAR_01302
Clostridium beijerincki NCIMB 8052
Position: -104
Score: 42.82
Sequence: ATGTTAAGAAGAAAC...
Locus tag: Cbei_1569
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Cbei_1570
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Cbei_1571
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -104 42.8 ATGTTAAGAAGAAAC... Cbei_1569
Clostridium bolteae ATCC BAA-613
Position: -240
Score: 16.05
Sequence: GACAGGAAAGCAGGT...
Locus tag: CLOBOL_05438
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOBOL_05437
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOBOL_05436
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -240 16 GACAGGAAAGCAGGT... CLOBOL_05438
Clostridium botulinum A str. ATCC 3502
Position: -162
Score: 54.1
Sequence: TTTATGTAAGTAGAA...
Locus tag: CBO3137
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CBO3136
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CBO3135
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -162 54.1 TTTATGTAAGTAGAA... CBO3137
Clostridium cellulolyticum H10
Position: -220
Score: 41.65
Sequence: AAAACAAGAAGAAGT...
Locus tag: Ccel_1311
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Ccel_1312
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Ccel_1313
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -220 41.7 AAAACAAGAAGAAGT... Ccel_1311
Clostridium difficile 630
Position: -163
Score: 31.86
Sequence: AAACAAAGAAGAAGT...
Locus tag: CD0685
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CD0686
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CD0687
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -163 31.9 AAACAAAGAAGAAGT... CD0685
Clostridium hiranonis DSM 13275
Position: -246
Score: 35.07
Sequence: ACAGCAAGTAGAAAT...
Locus tag: CLOHIR_01892
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOHIR_01893
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOHIR_01894
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -246 35.1 ACAGCAAGTAGAAAT... CLOHIR_01892
Clostridium kluyveri DSM 555
Position: -190
Score: 58.76
Sequence: AAACGTTAAGAAGAA...
Locus tag: CKL_3195
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CKL_3194
Name: rplT
Funciton: LSU ribosomal protein L20p
rpmI-rplT -190 58.8 AAACGTTAAGAAGAA... CKL_3195
Clostridium leptum DSM 753
Position: -79
Score: 34.51
Sequence: TACAACAAAGCAGAG...
Locus tag: CLOLEP_03303
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOLEP_03302
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOLEP_03301
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -79 34.5 TACAACAAAGCAGAG... CLOLEP_03303
Clostridium nexile DSM 1787
Position: -210
Score: 31.1
Sequence: AAAAAGAAAGCAGAG...
Locus tag: CLONEX_02671
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLONEX_02670
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLONEX_02669
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -210 31.1 AAAAAGAAAGCAGAG... CLONEX_02671
Clostridium novyi NT
Position: -316
Score: 61.85
Sequence: TCGTTAAGAAGAAAC...
Locus tag: NT01CX_1761
Name: infC
Funciton: Translation initiation factor 3
Locus tag: NT01CX_1762
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: NT01CX_1763
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -316 61.8 TCGTTAAGAAGAAAC... NT01CX_1761
Clostridium perfringens ATCC 13124
Position: -150
Score: 70.05
Sequence: TGATGTCAAGAAGAA...
Locus tag: CPF_2146
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CPF_2145
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CPF_2144
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -150 70.1 TGATGTCAAGAAGAA... CPF_2146
Clostridium phytofermentans ISDg
Position: -218
Score: 26.51
Sequence: ATAGCAAGTAGAGTA...
Locus tag: null
Name: infC
Funciton: Translation initiation factor 3
Locus tag: null
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: null
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -218 26.5 ATAGCAAGTAGAGTA... null
Clostridium scindens ATCC 35704
Position: -171
Score: 24.39
Sequence: AAACAAAGTAGAGTA...
Locus tag: CLOSCI_01277
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOSCI_01278
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOSCI_01279
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -171 24.4 AAACAAAGTAGAGTA... CLOSCI_01277
Clostridium sp. L2-50
Position: -156
Score: 50.66
Sequence: CAAGAAAGCAGAGTA...
Locus tag: CLOL250_00814
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOL250_00815
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOL250_00816
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -156 50.7 CAAGAAAGCAGAGTA... CLOL250_00814
Clostridium sp. OhILAs
Position: -271
Score: 35.57
Sequence: GTAAACAAAGAAGAA...
Locus tag: Clos_1978
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Clos_1977
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Clos_1976
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -271 35.6 GTAAACAAAGAAGAA... Clos_1978
Clostridium sp. SS2/1
Position: -92
Score: 29.56
Sequence: CAACAAAGAAGAGTA...
Locus tag: CLOSS21_02197
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CLOSS21_02198
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CLOSS21_02199
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -92 29.6 CAACAAAGAAGAGTA... CLOSS21_02197
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