Orthologous regulated operons containing grdB gene
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Clostridium botulinum A str. ATCC 3502 | ||||
|
Position: -239
Score: 20.82 Sequence: TATCCTTATAGGATA...
Position: -159
Score: 38.94 Sequence: GACAAAACTCTGGAA...
Locus tag: CBO1255
Name: grdX Funciton: putative glycine reductase complex component
Locus tag: CBO1256
Name: grdE Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CBO1257
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CBO1259
Name: trxB Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CBO1260
Name: trxA Funciton: Thioredoxin
Locus tag: CBO1261
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: CBO1263
Name: grdC Funciton: Glycine reductase component C chain 1
Locus tag: CBO1264
Name: grdD Funciton: Glycine reductase component C chain 2 |
||||
| grdX-grdE-grdB-trxB-trxA-grdA-grdC-grdD | -239 | 20.8 | TATCCTTATAGGATA... | CBO1255 |
| -159 | 38.9 | GACAAAACTCTGGAA... | ||
| Clostridium hiranonis DSM 13275 | ||||
|
Position: -185
Score: 33.99 Sequence: TGAAGCGTATAGGAG...
Locus tag: CLOHIR_00161
Name: grdX Funciton: putative glycine reductase complex component
Locus tag: CLOHIR_00162
Name: trxB Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CLOHIR_00163
Name: trxA Funciton: Thioredoxin
Locus tag: CLOHIR_00164
Name: grdE Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CLOHIR_00165
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: CLOHIR_00166
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: CLOHIR_00167
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOHIR_00168
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOHIR_00169
Name: grdC Funciton: Glycine reductase component C chain 1
Locus tag: CLOHIR_00170
Name: grdD Funciton: Glycine reductase component C chain 2 |
||||
| grdX-trxB-trxA-grdE-grdA-grdA-grdB-grdB-grdC-grdD | -185 | 34 | TGAAGCGTATAGGAG... | CLOHIR_00161 |
| Clostridium scindens ATCC 35704 | ||||
|
Position: -205
Score: 58.51 Sequence: ATGATGTTTCTCAAG...
Locus tag: CLOSCI_00776
Name: grdX Funciton: putative glycine reductase complex component
Locus tag: CLOSCI_00775
Name: grdE Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: CLOSCI_00774
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOSCI_00773
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: CLOSCI_00772
Name: trxB Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: CLOSCI_00771
Name: trxA Funciton: Thioredoxin
Locus tag: CLOSCI_00770
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: CLOSCI_00769
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: CLOSCI_00768
Name: grdC Funciton: Glycine reductase component C chain 1
Locus tag: CLOSCI_00767
Name: grdD Funciton: Glycine reductase component C chain 2 |
||||
| grdX-grdE-grdB-grdB-trxB-trxA-grdA-grdA-grdC-grdD | -205 | 58.5 | ATGATGTTTCTCAAG... | CLOSCI_00776 |
| Clostridium sp. OhILAs | ||||
|
Position: -298
Score: 52.62 Sequence: AGAAGAGTGCGGGAG...
Position: -194
Score: 40.5 Sequence: GACGGTACTCTGAAA...
Locus tag: Clos_0953
Name: grdX Funciton: putative glycine reductase complex component
Locus tag: Clos_0954
Name: trxB Funciton: Thioredoxin reductase (EC 1.8.1.9)
Locus tag: Clos_0955
Name: trxA Funciton: Thioredoxin
Locus tag: Clos_0956
Name: grdE Funciton: Glycine reductase component B (EC 1.21.4.2)
Locus tag: Clos_0957
Name: grdA Funciton: Glycine reductase complex protein A
Locus tag: Clos_0958
Name: grdB Funciton: Glycine reductase complex component B gamma subunit
Locus tag: Clos_0959
Name: grdC Funciton: Glycine reductase component C chain 1
Locus tag: Clos_0960
Name: grdD Funciton: Glycine reductase component C chain 2 |
||||
| grdX-trxB-trxA-grdE-grdA-grdB-grdC-grdD | -298 | 52.6 | AGAAGAGTGCGGGAG... | Clos_0953 |
| -194 | 40.5 | GACGGTACTCTGAAA... | ||