Orthologous regulated operons containing fliA gene

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Phylum:	Firmicutes

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Clostridium difficile 630
Position: -494 Score: 69.29 Sequence: AACTAAATAGGCAAA... Locus tag: CD0245 Name: flgB Funciton: Flagellar basal-body rod protein FlgB Locus tag: CD0246 Name: flgC Funciton: Flagellar basal-body rod protein FlgC Locus tag: CD0247 Name: fliE Funciton: Flagellar hook-basal body complex protein FliE Locus tag: CD0248 Name: fliF Funciton: Flagellar M-ring protein FliF Locus tag: CD0249 Name: fliG Funciton: Flagellar motor switch protein FliG Locus tag: CD0250 Name: fliH Funciton: Flagellar assembly protein FliH Locus tag: CD0251 Name: fliI Funciton: Flagellum-specific ATP synthase FliI Locus tag: CD0252 Name: fliJ Funciton: Flagellar protein FliJ Locus tag: CD0253 Name: fliK Funciton: Flagellar hook-length control protein FliK Locus tag: CD0254 Name: flgD Funciton: Flagellar basal-body rod modification protein FlgD Locus tag: CD0255 Name: flgE Funciton: Flagellar hook protein FlgE Locus tag: CD0255A Name: flbD Funciton: Flagellar protein FlbD Locus tag: CD0256 Name: motA Funciton: Flagellar motor rotation protein MotA Locus tag: CD0257 Name: motB Funciton: Flagellar motor rotation protein MotB Locus tag: CD0258 Name: fliL Funciton: Flagellar biosynthesis protein FliL Locus tag: CD0259 Name: fliZ Funciton: Flagellar biosynthesis protein FliZ Locus tag: CD0260 Name: fliP Funciton: Flagellar biosynthesis protein FliP Locus tag: CD0261 Name: fliQ Funciton: Flagellar biosynthesis protein FliQ Locus tag: CD0262 Name: fliR/flhB Funciton: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB Locus tag: CD0263 Name: flhA Funciton: Flagellar biosynthesis protein FlhA Locus tag: CD0264 Name: flhF Funciton: Flagellar biosynthesis protein FlhF Locus tag: CD0265 Name: fleN Funciton: Flagellar synthesis regulator FleN Locus tag: CD0266 Name: fliA Funciton: RNA polymerase sigma factor for flagellar operon fliA Locus tag: CD0267 Name: Cbei_4248 Funciton: hypothetical protein Locus tag: CD0268 Name: flgF Funciton: Flagellar basal-body rod protein FlgF Locus tag: CD0269 Name: flgG Funciton: Flagellar basal-body rod protein FlgG Locus tag: CD0270 Name: fliM Funciton: Flagellar motor switch protein FliM Locus tag: CD0271 Name: fliN Funciton: Flagellar motor switch protein FliN
flgB-flgC-fliE-fliF-fliG-fliH-fliI-fliJ-fliK-flgD-flgE-flbD-motA-motB-fliL-fliZ-fliP-fliQ-fliR/flhB-flhA-flhF-fleN-fliA-Cbei_4248-flgF-flgG-fliM-fliN	-494	69.3	AACTAAATAGGCAAA...	CD0245