Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ribD gene

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -170
Score: 110.37
Sequence: ATGTTCTTCAGGGAT...
Locus tag: CAC0590
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CAC0591
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CAC0592
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CAC0593
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -170 110.4 ATGTTCTTCAGGGAT... CAC0590
Clostridium bartlettii DSM 16795
Position: -253
Score: 120.74
Sequence: GATTATTCTTCGGGG...
Locus tag: CLOBAR_00909
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CLOBAR_00908
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CLOBAR_00907
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CLOBAR_00906
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -253 120.7 GATTATTCTTCGGGG... CLOBAR_00909
Clostridium beijerincki NCIMB 8052
Position: -447
Score: 111.26
Sequence: GAAATCTTCGGGGTT...
Locus tag: Cbei_1224
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Cbei_1225
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Cbei_1226
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Cbei_1227
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -447 111.3 GAAATCTTCGGGGTT... Cbei_1224
Clostridium botulinum A str. ATCC 3502
Position: -343
Score: 106.84
Sequence: ATGAATCCTTCAGGG...
Locus tag: CBO2866
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CBO2865
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CBO2864
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CBO2863
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -343 106.8 ATGAATCCTTCAGGG... CBO2866
Clostridium butyricum 5521
Position: -423
Score: 112.25
Sequence: TATTAATCTTCAGGG...
Locus tag: CBY_0685
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CBY_0684
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CBY_0683
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CBY_0682
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -423 112.2 TATTAATCTTCAGGG... CBY_0685
Clostridium cellulolyticum H10
Position: -206
Score: 102.34
Sequence: ATGACACTTCAGGGA...
Locus tag: Ccel_2006
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Ccel_2005
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Ccel_2004
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Ccel_2003
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -206 102.3 ATGACACTTCAGGGA... Ccel_2006
Clostridium difficile 630
Position: -254
Score: 118.75
Sequence: ACTTAATCTTCGGGG...
Locus tag: CD1700
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CD1699
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CD1698
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CD1697
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -254 118.8 ACTTAATCTTCGGGG... CD1700
Clostridium hiranonis DSM 13275
Position: -211
Score: 123.02
Sequence: ACTATCTTCAGGGCA...
Locus tag: CLOHIR_00483
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CLOHIR_00484
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CLOHIR_00485
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CLOHIR_00486
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -211 123 ACTATCTTCAGGGCA... CLOHIR_00483
Clostridium kluyveri DSM 555
Position: -394
Score: 103.11
Sequence: AATATGCTTTCGGGG...
Locus tag: CKL_2169
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CKL_2168
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CKL_2167
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CKL_2166
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -394 103.1 AATATGCTTTCGGGG... CKL_2169
Clostridium novyi NT
Position: -387
Score: 113.43
Sequence: TTTAATCCTTCAGGG...
Locus tag: NT01CX_0715
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: NT01CX_0714
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: NT01CX_0713
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: NT01CX_0712
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -387 113.4 TTTAATCCTTCAGGG... NT01CX_0715
Clostridium perfringens ATCC 13124
Position: -465
Score: 122.32
Sequence: AAATTCTTCAGGGCA...
Locus tag: CPF_0546
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CPF_0547
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CPF_0548
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CPF_0549
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -465 122.3 AAATTCTTCAGGGCA... CPF_0546
Clostridium sp. SS2/1
Position: -336
Score: 117.47
Sequence: AACGTCTTCAGGGCA...
Locus tag: CLOSS21_03172
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CLOSS21_03173
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CLOSS21_03174
Name: ribA
Funciton: GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CLOSS21_03175
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: CLOSS21_03176
Name: fggY
Funciton: Sugar (pentulose and hexulose) kinase, FGGY family
ribD-ribE-ribA-ribH-fggY -336 117.5 AACGTCTTCAGGGCA... CLOSS21_03172
Clostridium tetani E88
Position: -254
Score: 108.51
Sequence: ACATCCTTCAGGGTT...
Locus tag: CTC00671
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CTC00672
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CTC00673
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CTC00674
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -254 108.5 ACATCCTTCAGGGTT... CTC00671
© 2009-2020 RegPrecise