Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ribU gene

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -198
Score: 121.47
Sequence: GAATGATCTTCAGGG...
Locus tag: CAC2841
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -198 121.5 GAATGATCTTCAGGG... CAC2841
Clostridium bartlettii DSM 16795
Position: -231
Score: 119.42
Sequence: AAAAAATCTTCGGGG...
Locus tag: CLOBAR_00719
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -231 119.4 AAAAAATCTTCGGGG... CLOBAR_00719
Clostridium beijerincki NCIMB 8052
Position: -306
Score: 121.2
Sequence: TATATCTTCAGGGCA...
Locus tag: Cbei_0464
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -306 121.2 TATATCTTCAGGGCA... Cbei_0464
Clostridium bolteae ATCC BAA-613
Position: -352
Score: 114.43
Sequence: TAAAGTTCTTCGGGG...
Locus tag: CLOBOL_02256
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -352 114.4 TAAAGTTCTTCGGGG... CLOBOL_02256
Clostridium botulinum A str. ATCC 3502
Position: -211
Score: 121.04
Sequence: AATATCTTCAGGGCG...
Locus tag: CBO0178
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -211 121 AATATCTTCAGGGCG... CBO0178
Clostridium butyricum 5521
Position: -276
Score: 118.91
Sequence: TATATCTTCAGGGCA...
Locus tag: CBY_3957
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -276 118.9 TATATCTTCAGGGCA... CBY_3957
Clostridium cellulolyticum H10
Position: -226
Score: 116.22
Sequence: AATATCTTCAGGGCA...
Locus tag: Ccel_3408
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -226 116.2 AATATCTTCAGGGCA... Ccel_3408
Clostridium difficile 630
Position: -268
Score: 123.2
Sequence: AAGATCTTCGGGGCA...
Locus tag: CD0147
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -268 123.2 AAGATCTTCGGGGCA... CD0147
Clostridium hiranonis DSM 13275
Position: -311
Score: 112.62
Sequence: GATGTCTTCAGGGCA...
Locus tag: CLOHIR_01113
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -311 112.6 GATGTCTTCAGGGCA... CLOHIR_01113
Clostridium kluyveri DSM 555
Position: -359
Score: 122.75
Sequence: ATATAATCTTCAGGG...
Locus tag: CKL_3611
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -359 122.8 ATATAATCTTCAGGG... CKL_3611
Clostridium leptum DSM 753
Position: -210
Score: 119.73
Sequence: GCTGTCTTCGGGGCG...
Locus tag: CLOLEP_01531
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -210 119.7 GCTGTCTTCGGGGCG... CLOLEP_01531
Clostridium nexile DSM 1787
Position: -239
Score: 113.38
Sequence: GGATTCTTCGGGGCA...
Locus tag: CLONEX_02849
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -239 113.4 GGATTCTTCGGGGCA... CLONEX_02849
Clostridium novyi NT
Position: -229
Score: 124.69
Sequence: ATAGTATCTTCAGGG...
Locus tag: NT01CX_0505
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -229 124.7 ATAGTATCTTCAGGG... NT01CX_0505
Clostridium perfringens ATCC 13124
Position: -244
Score: 117.16
Sequence: AAAAAGTCTTCAGGG...
Locus tag: CPF_2425
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -244 117.2 AAAAAGTCTTCAGGG... CPF_2425
Clostridium phytofermentans ISDg
Position: -395
Score: 94.18
Sequence: AAGTTCTTCGGGGCA...
Locus tag: null
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -395 94.2 AAGTTCTTCGGGGCA... null
Clostridium scindens ATCC 35704
Position: -142
Score: 109.59
Sequence: AGAGATTCTTCGGGG...
Locus tag: CLOSCI_02146
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -142 109.6 AGAGATTCTTCGGGG... CLOSCI_02146
Clostridium sp. OhILAs
Position: -277
Score: 117.93
Sequence: TATGATTCTTCAGGG...
Locus tag: Clos_2474
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -277 117.9 TATGATTCTTCAGGG... Clos_2474
Clostridium sp. SS2/1
Position: -291
Score: 88.7
Sequence: TCTCCAACTTCAGGG...
Locus tag: CLOSS21_01295
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -291 88.7 TCTCCAACTTCAGGG... CLOSS21_01295
Clostridium tetani E88
Position: -211
Score: 120.94
Sequence: AATATCTTCAGGGCG...
Locus tag: CTC00331
Name: ribU
Funciton: Substrate-specific component RibU of riboflavin ECF transporter
ribU -211 120.9 AATATCTTCAGGGCG... CTC00331
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