Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing cbiN gene

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -313
Score: 105.44
Sequence: TGCTACTAAAATTTG...
Locus tag: CAC1365
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CAC1366
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CAC1367
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CAC1368
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: CAC1369
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: CAC1370
Name: cbiG
Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: CAC1371
Name: pduX
Funciton: Threonine kinase in B12 biosynthesis
Locus tag: CAC1372
Name: cobT
Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: CAC1373
Name: cbiK
Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: CAC1374
Name: cbiP
Funciton: Cobyric acid synthase
Locus tag: CAC1375
Name: cbiA
Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: CAC1376
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: CAC1377
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: CAC1378
Name: cbiT
Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: CAC1379
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: CAC1380
Name: cbiF
Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: CAC1381
Name: cbiJ
Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: CAC1382
Name: cbiH
Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: CAC1383
Name: cobU
Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: CAC1384
Name: cobS
Funciton: Cobalamin synthase
Locus tag: CAC1385
Name: cobC
Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
cbiM-cbiN-cbiQ-cbiO-cobD-cbiG-pduX-cobT-cbiK-cbiP-cbiA-cbiC-cbiD-cbiT-cbiL-cbiF-cbiJ-cbiH-cobU-cobS-cobC -313 105.4 TGCTACTAAAATTTG... CAC1365
Clostridium bartlettii DSM 16795
Position: -386
Score: 114.73
Sequence: AGATGAAATGTATAT...
Locus tag: CLOBAR_01388
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CLOBAR_01387
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CLOBAR_01386
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CLOBAR_01385
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -386 114.7 AGATGAAATGTATAT... CLOBAR_01388
Clostridium botulinum A str. ATCC 3502
Position: -323
Score: 122.69
Sequence: TTTAATAAAAAGATT...
Locus tag: CBO0914
Name: cbiP
Funciton: Cobyric acid synthase
Locus tag: CBO0915
Name: cbiB
Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: CBO0916
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: CBO0917
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CBO0917A
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CBO0918
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CBO0919
Name: cysG1
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Locus tag: CBO0920
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: CBO0921
Name: cobA-hemD
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: CBO0922
Name: null
Funciton: hypothetical protein
Locus tag: CBO0923
Name: hemB
Funciton: Porphobilinogen synthase (EC 4.2.1.24)
Locus tag: CBO0924
Name: cbiA
Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: CBO0925
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: CBO0926
Name: null
Funciton: CAAX amino terminal protease family
Locus tag: CBO0927
Name: wrbA
Funciton: Iron-sulfur flavoprotein
Locus tag: CBO0928
Name: Cbei_2684
Funciton: HD domain protein
Locus tag: CBO0929
Name: null
Funciton: hypothetical protein
Locus tag: CBO0930
Name: null
Funciton: Transcriptional regulator, MerR family
Locus tag: CBO0931
Name: CBO0931
Funciton: Acetyltransferase (EC 2.3.1.-)
Locus tag: CBO0933
Name: CD0837
Funciton: Nitroreductase family protein
Locus tag: CBO0934
Name: null
Funciton: membrane protein
Locus tag: CBO0935
Name: null
Funciton: Glutamate-rich protein grpB
Locus tag: CBO0936
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: CBO0937
Name: cbiE
Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Locus tag: CBO0938
Name: CBO0938
Funciton: CAAX amino terminal protease family protein
Locus tag: CBO0939
Name: cbiT
Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: CBO0940
Name: null
Funciton: hypothetical protein
Locus tag: CBO0941
Name: null
Funciton: hypothetical protein
Locus tag: CBO0941A
Name: null
Funciton: membrane protein
Locus tag: CBO0942
Name: null
Funciton: membrane protein
Locus tag: CBO0943
Name: null
Funciton: hypothetical protein
Locus tag: CBO0944
Name: null
Funciton: Predicted secreted nucleic acid binding protein
Locus tag: CBO0945
Name: Cbei_3085
Funciton: Isochorismatase (EC 3.3.2.1)
Locus tag: CBO0946
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: CBO0947
Name: cbiF
Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: CBO0948
Name: cbiG
Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: CBO0949
Name: cbiH
Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: CBO0950
Name: cbiJ
Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: CBO0951
Name: cblT
Funciton: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
Locus tag: CBO0952
Name: cbiK
Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: CBO0953
Name: pduX
Funciton: Threonine kinase in B12 biosynthesis
Locus tag: CBO0954
Name: btuR
Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
cbiP-cbiB-cobD-cbiM-cbiN-cbiQ-cysG1-hemC-cobA-hemD-CBO0922-hemB-cbiA-cbiC-CBO0926-wrbA-Cbei_2684-CBO0929-CBO0930-CBO0931-CD0837-CBO0934-CBO0935-cbiD-cbiE-CBO0938-cbiT-CBO0940-CBO0941-CBO0941A-CBO0942-CBO0943-CBO0944-Cbei_3085-cbiL-cbiF-cbiG-cbiH-cbiJ-cblT-cbiK-pduX-btuR -323 122.7 TTTAATAAAAAGATT... CBO0914
Clostridium butyricum 5521
Position: -417
Score: 102.37
Sequence: CAAAAATATAATTAT...
Locus tag: CBY_1415
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CBY_1414
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
cbiM-cbiN -417 102.4 CAAAAATATAATTAT... CBY_1415
Clostridium cellulolyticum H10
Position: -380
Score: 95.57
Sequence: TAATAATTAACGATA...
Locus tag: Ccel_1266
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Ccel_1267
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Ccel_1268
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Ccel_1269
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: Ccel_1270
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: Ccel_1271
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Ccel_1272
Name: cbiF
Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Ccel_1273
Name: cbiG
Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: Ccel_1274
Name: hemA
Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: Ccel_1275
Name: cbiH
Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: Ccel_1276
Name: cbiJ
Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: Ccel_1277
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Ccel_1278
Name: cobA-hemD
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Ccel_1279
Name: hemB
Funciton: Porphobilinogen synthase (EC 4.2.1.24)
Locus tag: Ccel_1280
Name: hemL
Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
Locus tag: Ccel_1281
Name: cbiX
Funciton: Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)
Locus tag: Ccel_1282
Name: cbiET
Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Ccel_1283
Name: cbiA
Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: Ccel_1284
Name: cbiP
Funciton: Cobyric acid synthase
Locus tag: Ccel_1285
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Ccel_1286
Name: cbiB
Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Ccel_1287
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
cbiM-cbiN-cbiQ-cbiO-cbiD-cbiL-cbiF-cbiG-hemA-cbiH-cbiJ-hemC-cobA-hemD-hemB-hemL-cbiX-cbiET-cbiA-cbiP-cbiC-cbiB-cobD -380 95.6 TAATAATTAACGATA... Ccel_1266
Clostridium difficile 630
Position: -373
Score: 102.77
Sequence: AAATATATAATATTA...
Locus tag: CD0324
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CD0325
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CD0326
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CD0327
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -373 102.8 AAATATATAATATTA... CD0324
Clostridium hiranonis DSM 13275
Position: -403
Score: 101.91
Sequence: GAATATAAATAGTTT...
Locus tag: CLOHIR_01689
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CLOHIR_01690
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CLOHIR_01691
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CLOHIR_01692
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -403 101.9 GAATATAAATAGTTT... CLOHIR_01689
Clostridium kluyveri DSM 555
Position: -345
Score: 89.08
Sequence: AATTTAATAATAAAA...
Locus tag: CKL_3429
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CKL_3428
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CKL_3427
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CKL_3426
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -345 89.1 AATTTAATAATAAAA... CKL_3429
Clostridium novyi NT
Position: -349
Score: 95.81
Sequence: AAAATACATACAAAG...
Locus tag: NT01CX_1329
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: NT01CX_1330
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: NT01CX_1331
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: NT01CX_1332
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -349 95.8 AAAATACATACAAAG... NT01CX_1329
Clostridium perfringens ATCC 13124
Position: -486
Score: 93.49
Sequence: TTAAATATTTAGAAA...
Locus tag: CPF_0185
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CPF_0186
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CPF_0187
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CPF_0188
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -486 93.5 TTAAATATTTAGAAA... CPF_0185
Clostridium phytofermentans ISDg
Position: -371
Score: 50.16
Sequence: GAAGTTGGGTGCAAT...
Locus tag: null
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: null
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: null
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: null
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: null
Name: cbiK
Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
cbiQ-cbiO-cbiM-cbiN-cbiK -371 50.2 GAAGTTGGGTGCAAT... null
Clostridium scindens ATCC 35704
Position: -376
Score: 65.35
Sequence: ACTTATTGTGGTCAT...
Locus tag: CLOSCI_03609
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CLOSCI_03610
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CLOSCI_03611
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CLOSCI_03612
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
cbiM-cbiN-cbiQ-cbiO -376 65.3 ACTTATTGTGGTCAT... CLOSCI_03609
Clostridium sp. OhILAs
Position: -432
Score: 121.76
Sequence: GTAAATAAGAAGCAT...
Locus tag: Clos_1011
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Clos_1012
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Clos_1013
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Clos_1014
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: Clos_1015
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Clos_1016
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: Clos_1017
Name: cbiE
Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Locus tag: Clos_1018
Name: cbiT
Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Clos_1019
Name: cbiF
Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Clos_1020
Name: cbiG
Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: Clos_1021
Name: cbiH
Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: Clos_1022
Name: cbiJ
Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: Clos_1023
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiM-cbiN-cbiQ-cbiO-cbiC-cbiD-cbiE-cbiT-cbiF-cbiG-cbiH-cbiJ-cbiL -432 121.8 GTAAATAAGAAGCAT... Clos_1011
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