Orthologous regulated operons containing ysxB gene

Properties
Regulator type:	RNA regulatory element
Name:	L21_leader
RFAM:	RF00559
Regulation mode:
Biological process:	Ribosome biogenesis
Effector:
Phylum:	Firmicutes

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Lactobacillus brevis ATCC 367
Position: -99 Score: 61.41 Sequence: TCCACAGCTGCAACC... Locus tag: LVIS_0985 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LVIS_0984 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LVIS_0983 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-99	61.4	TCCACAGCTGCAACC...	LVIS_0985
Lactobacillus casei ATCC 334
Position: -101 Score: 45.19 Sequence: CCCTCCTATGCAACC... Locus tag: LSEI_1646 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LSEI_1645 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LSEI_1644 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-101	45.2	CCCTCCTATGCAACC...	LSEI_1646
Lactobacillus fermentum IFO 3956
Position: -83 Score: 50.39 Sequence: CCCACAACTACAACC... Locus tag: LAF_1269 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LAF_1268 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LAF_1267 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-83	50.4	CCCACAACTACAACC...	LAF_1269
Lactobacillus plantarum WCFS1
Position: -95 Score: 53.9 Sequence: TACAGCTACAACCGC... Locus tag: lp_1592 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: lp_1593 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: lp_1594 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-95	53.9	TACAGCTACAACCGC...	lp_1592
Lactobacillus reuteri JCM 1112
Position: -89 Score: 50.62 Sequence: CCAACAACTACAACC... Locus tag: LAR_1124 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LAR_1123 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LAR_1122 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-89	50.6	CCAACAACTACAACC...	LAR_1124
Lactobacillus rhamnosus GG
Position: -100 Score: 42.6 Sequence: CCCTCCTATGCAACC... Locus tag: LGG_01690 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LGG_01689 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LGG_01688 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-100	42.6	CCCTCCTATGCAACC...	LGG_01690
Lactobacillus sakei subsp. sakei 23K
Position: -88 Score: 62.63 Sequence: CACAGCTGCAACCGC... Locus tag: LSA0670 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LSA0671 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LSA0672 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-88	62.6	CACAGCTGCAACCGC...	LSA0670
Lactobacillus salivarius subsp. salivarius UCC118
Position: -95 Score: 59.04 Sequence: ATCACATCTGCAACC... Locus tag: LSL_0956 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: LSL_0955 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: LSL_0954 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-95	59	ATCACATCTGCAACC...	LSL_0956
Pediococcus pentosaceus ATCC 25745
Position: -79 Score: 57.93 Sequence: CCACGCTACAACCGC... Locus tag: PEPE_0811 Name: rplU Funciton: LSU ribosomal protein L21p Locus tag: PEPE_0812 Name: ysxB Funciton: FIG139598: Potential ribosomal protein Locus tag: PEPE_0813 Name: rpmA Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA	-79	57.9	CCACGCTACAACCGC...	PEPE_0811

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Orthologous regulated operons containing ysxB gene

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --