Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ykoD gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus brevis ATCC 367
Position: -180
Score: 58.1
Sequence: ACATATGACTGGGGT...
Locus tag: LVIS_1827
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LVIS_1828
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LVIS_1829
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LVIS_1830
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
ykoE-ykoD-ykoC-tenA -180 58.1 ACATATGACTGGGGT... LVIS_1827
Lactobacillus casei ATCC 334
Position: -245
Score: 68.22
Sequence: AGAAACATTTGGGGT...
Locus tag: LSEI_0294
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0295
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0296
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0297
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
Locus tag: LSEI_0298
Name: thiW
Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
Locus tag: LSEI_0299
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LSEI_0300
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: LSEI_0301
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
ykoE-ykoD-ykoC-tenA-thiW-thiM-thiE-thiD -245 68.2 AGAAACATTTGGGGT... LSEI_0294
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Position: -118
Score: 37.82
Sequence: GACGAATCAACGGGG...
Locus tag: LBUL_0126
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LBUL_0125
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoD-ykoC -118 37.8 GACGAATCAACGGGG... LBUL_0126
Lactobacillus fermentum IFO 3956
Position: -168
Score: 57.74
Sequence: TATCTTGTCTGGGGT...
Locus tag: LAF_1705
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAF_1706
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAF_1707
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -168 57.7 TATCTTGTCTGGGGT... LAF_1705
Lactobacillus johnsonii NCC 533
Position: -142
Score: 59.39
Sequence: GTAAATACATCTGGG...
Locus tag: LJ0074
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LJ0073
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LJ0072
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -142 59.4 GTAAATACATCTGGG... LJ0074
Lactobacillus plantarum WCFS1
Position: -197
Score: 58.06
Sequence: TTCATAGCAACTGGG...
Locus tag: lp_0219
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: lp_0218
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: lp_0217
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -197 58.1 TTCATAGCAACTGGG... lp_0219
Lactobacillus reuteri JCM 1112
Position: -156
Score: 71.88
Sequence: GAATAAATCTGGGGT...
Locus tag: LAR_1550
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAR_1551
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAR_1552
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -156 71.9 GAATAAATCTGGGGT... LAR_1550
Lactobacillus rhamnosus GG
Position: -289
Score: 71.02
Sequence: AGAAACATTTGGGGT...
Locus tag: LGG_00363
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00364
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00365
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00366
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
Locus tag: LGG_00367
Name: thiW
Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
Locus tag: LGG_00368
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LGG_00369
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: LGG_00370
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
ykoE-ykoD-ykoC-tenA-thiW-thiM-thiE-thiD -289 71 AGAAACATTTGGGGT... LGG_00363
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -213
Score: 60.46
Sequence: AATATTTTATCTGGG...
Locus tag: LEUM_1545
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LEUM_1544
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LEUM_1543
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC -213 60.5 AATATTTTATCTGGG... LEUM_1545
Oenococcus oeni PSU-1
Position: -251
Score: 65.03
Sequence: ACATCAAAATCTGGG...
Locus tag: OEOE_1491
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: OEOE_1490
Name: null
Funciton: hypothetical protein
Locus tag: OEOE_1489
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: OEOE_1488
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-OEOE_1490-ykoD-ykoC -251 65 ACATCAAAATCTGGG... OEOE_1491
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