Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing thiD gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus brevis ATCC 367
Position: -334
Score: 64.26
Sequence: ACCAAAACACTAGGG...
Locus tag: LVIS_2099
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LVIS_2098
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LVIS_2097
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM-thiD-thiE -334 64.3 ACCAAAACACTAGGG... LVIS_2099
Lactobacillus casei ATCC 334
Position: -245
Score: 68.22
Sequence: AGAAACATTTGGGGT...
Locus tag: LSEI_0294
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0295
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0296
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LSEI_0297
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
Locus tag: LSEI_0298
Name: thiW
Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
Locus tag: LSEI_0299
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LSEI_0300
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: LSEI_0301
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
ykoE-ykoD-ykoC-tenA-thiW-thiM-thiE-thiD -245 68.2 AGAAACATTTGGGGT... LSEI_0294
Lactobacillus fermentum IFO 3956
Position: -282
Score: 61.95
Sequence: TAATAGTTGCTAGGG...
Locus tag: LAF_0803
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LAF_0802
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LAF_0801
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM-thiD-thiE -282 62 TAATAGTTGCTAGGG... LAF_0803
Lactobacillus plantarum WCFS1
Position: -183
Score: 67.44
Sequence: TTAAACACTAGGGGT...
Locus tag: lp_0113
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: lp_0114
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: lp_0115
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: lp_0116
Name: cytX
Funciton: Predicted hydroxymethylpyrimidine transporter CytX
thiM-thiD-thiE-cytX -183 67.4 TTAAACACTAGGGGT... lp_0113
Lactobacillus reuteri JCM 1112
Position: -162
Score: 54.26
Sequence: TATTGCATTAGGGGT...
Locus tag: LAR_0968
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LAR_0969
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LAR_0970
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM-thiD-thiE -162 54.3 TATTGCATTAGGGGT... LAR_0968
Lactobacillus rhamnosus GG
Position: -289
Score: 71.02
Sequence: AGAAACATTTGGGGT...
Locus tag: LGG_00363
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00364
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00365
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LGG_00366
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
Locus tag: LGG_00367
Name: thiW
Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
Locus tag: LGG_00368
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LGG_00369
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: LGG_00370
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
ykoE-ykoD-ykoC-tenA-thiW-thiM-thiE-thiD -289 71 AGAAACATTTGGGGT... LGG_00363
Lactobacillus sakei subsp. sakei 23K
Position: -178
Score: 69.43
Sequence: CGCTTTGCACTAGGG...
Locus tag: LSA0059
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LSA0058
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LSA0057
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: LSA0055
Name: cytX
Funciton: Predicted hydroxymethylpyrimidine transporter CytX
thiM-thiD-thiE-cytX -178 69.4 CGCTTTGCACTAGGG... LSA0059
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -234
Score: 60.02
Sequence: ATAAATATCTGGGGT...
Locus tag: LEUM_0485
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LEUM_0486
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LEUM_0487
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM-thiD-thiE -234 60 ATAAATATCTGGGGT... LEUM_0485
Pediococcus pentosaceus ATCC 25745
Position: -185
Score: 66.6
Sequence: ATCTGCACTAGGGGT...
Locus tag: PEPE_0558
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: PEPE_0559
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: PEPE_0560
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: PEPE_0561
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
thiM-thiD-thiE-tenA -185 66.6 ATCTGCACTAGGGGT... PEPE_0558
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