Orthologous regulated operons containing rplT gene
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Lactobacillus acidophilus NCFM | ||||
|
Position: -220
Score: 74.71 Sequence: TGAGAACAAGAAGAA...
Locus tag: LBA1538
Name: infC Funciton: Translation initiation factor 3
Locus tag: LBA1537
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LBA1536
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -220 | 74.7 | TGAGAACAAGAAGAA... | LBA1538 |
| Lactobacillus brevis ATCC 367 | ||||
|
Position: -235
Score: 50.77 Sequence: AGAAATTAAGCAGAG...
Locus tag: LVIS_1035
Name: infC Funciton: Translation initiation factor 3
Locus tag: LVIS_1034
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LVIS_1033
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -235 | 50.8 | AGAAATTAAGCAGAG... | LVIS_1035 |
| Lactobacillus casei ATCC 334 | ||||
|
Position: -192
Score: 52.5 Sequence: TGAGAAAAAGCAGAA...
Locus tag: LSEI_1699
Name: infC Funciton: Translation initiation factor 3
Locus tag: LSEI_1698
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LSEI_1697
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -192 | 52.5 | TGAGAAAAAGCAGAA... | LSEI_1699 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||||
|
Position: -160
Score: 67.22 Sequence: TGAGAACAAGAAGAA...
Locus tag: LBUL_1398
Name: infC Funciton: Translation initiation factor 3
Locus tag: LBUL_1397
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LBUL_1396
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -160 | 67.2 | TGAGAACAAGAAGAA... | LBUL_1398 |
| Lactobacillus fermentum IFO 3956 | ||||
|
Position: -181
Score: 60.36 Sequence: AAAGAAAAAGTAGAA...
Locus tag: LAF_1311
Name: infC Funciton: Translation initiation factor 3
Locus tag: LAF_1310
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LAF_1309
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -181 | 60.4 | AAAGAAAAAGTAGAA... | LAF_1311 |
| Lactobacillus helveticus DPC 4571 | ||||
|
Position: -315
Score: 61.4 Sequence: TGAGAACAAGAAGAA...
Locus tag: lhv_1598
Name: infC Funciton: Translation initiation factor 3
Locus tag: lhv_1597
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: lhv_1596
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -315 | 61.4 | TGAGAACAAGAAGAA... | lhv_1598 |
| Lactobacillus johnsonii NCC 533 | ||||
|
Position: -152
Score: 66.88 Sequence: TGAGAACAAGAAGAA...
Locus tag: LJ1641
Name: infC Funciton: Translation initiation factor 3
Locus tag: LJ1640b
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LJ1640
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -152 | 66.9 | TGAGAACAAGAAGAA... | LJ1641 |
| Lactobacillus plantarum WCFS1 | ||||
|
Position: -146
Score: 88.76 Sequence: AAAAAAAGCAGAAGC...
Locus tag: lp_1515
Name: infC Funciton: Translation initiation factor 3
Locus tag: lp_1516
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: lp_1517
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -146 | 88.8 | AAAAAAAGCAGAAGC... | lp_1515 |
| Lactobacillus reuteri JCM 1112 | ||||
|
Position: -180
Score: 57.75 Sequence: AAAGAAAAAGCAGAA...
Locus tag: LAR_1175
Name: infC Funciton: Translation initiation factor 3
Locus tag: LAR_1174
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LAR_1173
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -180 | 57.8 | AAAGAAAAAGCAGAA... | LAR_1175 |
| Lactobacillus rhamnosus GG | ||||
|
Position: -192
Score: 52.17 Sequence: TGAGAAAAAGCAGAA...
Locus tag: LGG_01747
Name: infC Funciton: Translation initiation factor 3
Locus tag: LGG_01746
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LGG_01745
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -192 | 52.2 | TGAGAAAAAGCAGAA... | LGG_01747 |
| Lactobacillus sakei subsp. sakei 23K | ||||
|
Position: -189
Score: 57.65 Sequence: AGAAATAAAGCAGAA...
Locus tag: LSA1398
Name: infC Funciton: Translation initiation factor 3
Locus tag: LSA1397
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LSA1396
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -189 | 57.7 | AGAAATAAAGCAGAA... | LSA1398 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||||
|
Position: -154
Score: 56.12 Sequence: AGAAAAAGCAGAGGC...
Locus tag: LSL_0495
Name: infC Funciton: Translation initiation factor 3
Locus tag: LSL_0496
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LSL_0497
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -154 | 56.1 | AGAAAAAGCAGAGGC... | LSL_0495 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||||
|
Position: -246
Score: 57.74 Sequence: GTTGAACAAGTAGAA...
Locus tag: LEUM_1443
Name: infC Funciton: Translation initiation factor 3
Locus tag: LEUM_1442
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: LEUM_1441
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -246 | 57.7 | GTTGAACAAGTAGAA... | LEUM_1443 |
| Oenococcus oeni PSU-1 | ||||
|
Position: -85
Score: 29.48 Sequence: TTGAATTAAGTAGAG...
Locus tag: OEOE_1280
Name: infC Funciton: Translation initiation factor 3
Locus tag: OEOE_1279
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: OEOE_1278
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -85 | 29.5 | TTGAATTAAGTAGAG... | OEOE_1280 |
| Pediococcus pentosaceus ATCC 25745 | ||||
|
Position: -168
Score: 70.66 Sequence: AGAAAAAGCAGAAGC...
Locus tag: PEPE_0699
Name: infC Funciton: Translation initiation factor 3
Locus tag: PEPE_0700
Name: rpmI Funciton: LSU ribosomal protein L35p
Locus tag: PEPE_0701
Name: rplT Funciton: LSU ribosomal protein L20p |
||||
| infC-rpmI-rplT | -168 | 70.7 | AGAAAAAGCAGAAGC... | PEPE_0699 |