Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing infC gene

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus acidophilus NCFM
Position: -220
Score: 74.71
Sequence: TGAGAACAAGAAGAA...
Locus tag: LBA1538
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LBA1537
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LBA1536
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -220 74.7 TGAGAACAAGAAGAA... LBA1538
Lactobacillus brevis ATCC 367
Position: -235
Score: 50.77
Sequence: AGAAATTAAGCAGAG...
Locus tag: LVIS_1035
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LVIS_1034
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LVIS_1033
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -235 50.8 AGAAATTAAGCAGAG... LVIS_1035
Lactobacillus casei ATCC 334
Position: -192
Score: 52.5
Sequence: TGAGAAAAAGCAGAA...
Locus tag: LSEI_1699
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LSEI_1698
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LSEI_1697
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -192 52.5 TGAGAAAAAGCAGAA... LSEI_1699
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Position: -160
Score: 67.22
Sequence: TGAGAACAAGAAGAA...
Locus tag: LBUL_1398
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LBUL_1397
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LBUL_1396
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -160 67.2 TGAGAACAAGAAGAA... LBUL_1398
Lactobacillus fermentum IFO 3956
Position: -181
Score: 60.36
Sequence: AAAGAAAAAGTAGAA...
Locus tag: LAF_1311
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LAF_1310
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LAF_1309
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -181 60.4 AAAGAAAAAGTAGAA... LAF_1311
Lactobacillus helveticus DPC 4571
Position: -315
Score: 61.4
Sequence: TGAGAACAAGAAGAA...
Locus tag: lhv_1598
Name: infC
Funciton: Translation initiation factor 3
Locus tag: lhv_1597
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: lhv_1596
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -315 61.4 TGAGAACAAGAAGAA... lhv_1598
Lactobacillus johnsonii NCC 533
Position: -152
Score: 66.88
Sequence: TGAGAACAAGAAGAA...
Locus tag: LJ1641
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LJ1640b
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LJ1640
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -152 66.9 TGAGAACAAGAAGAA... LJ1641
Lactobacillus plantarum WCFS1
Position: -146
Score: 88.76
Sequence: AAAAAAAGCAGAAGC...
Locus tag: lp_1515
Name: infC
Funciton: Translation initiation factor 3
Locus tag: lp_1516
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: lp_1517
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -146 88.8 AAAAAAAGCAGAAGC... lp_1515
Lactobacillus reuteri JCM 1112
Position: -180
Score: 57.75
Sequence: AAAGAAAAAGCAGAA...
Locus tag: LAR_1175
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LAR_1174
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LAR_1173
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -180 57.8 AAAGAAAAAGCAGAA... LAR_1175
Lactobacillus rhamnosus GG
Position: -192
Score: 52.17
Sequence: TGAGAAAAAGCAGAA...
Locus tag: LGG_01747
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LGG_01746
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LGG_01745
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -192 52.2 TGAGAAAAAGCAGAA... LGG_01747
Lactobacillus sakei subsp. sakei 23K
Position: -189
Score: 57.65
Sequence: AGAAATAAAGCAGAA...
Locus tag: LSA1398
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LSA1397
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LSA1396
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -189 57.7 AGAAATAAAGCAGAA... LSA1398
Lactobacillus salivarius subsp. salivarius UCC118
Position: -154
Score: 56.12
Sequence: AGAAAAAGCAGAGGC...
Locus tag: LSL_0495
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LSL_0496
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LSL_0497
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -154 56.1 AGAAAAAGCAGAGGC... LSL_0495
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -246
Score: 57.74
Sequence: GTTGAACAAGTAGAA...
Locus tag: LEUM_1443
Name: infC
Funciton: Translation initiation factor 3
Locus tag: LEUM_1442
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: LEUM_1441
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -246 57.7 GTTGAACAAGTAGAA... LEUM_1443
Oenococcus oeni PSU-1
Position: -85
Score: 29.48
Sequence: TTGAATTAAGTAGAG...
Locus tag: OEOE_1280
Name: infC
Funciton: Translation initiation factor 3
Locus tag: OEOE_1279
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: OEOE_1278
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -85 29.5 TTGAATTAAGTAGAG... OEOE_1280
Pediococcus pentosaceus ATCC 25745
Position: -168
Score: 70.66
Sequence: AGAAAAAGCAGAAGC...
Locus tag: PEPE_0699
Name: infC
Funciton: Translation initiation factor 3
Locus tag: PEPE_0700
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: PEPE_0701
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -168 70.7 AGAAAAAGCAGAAGC... PEPE_0699
© 2009-2020 RegPrecise