Orthologous regulated operons containing ykoD gene

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Actinobacteria

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Corynebacterium aurimucosum ATCC 700975
Position: -166 Score: 50.36 Sequence: CACATCGTCACGGGT... Locus tag: cauri_0372 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cauri_0373 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cauri_0374 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cauri_0375 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK	-166	50.4	CACATCGTCACGGGT...	cauri_0372
Corynebacterium diphtheriae NCTC 13129
Position: -106 Score: 59.46 Sequence: CGAGATGCCCGGGTG... Locus tag: DIP0953 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: DIP0954 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: DIP0955 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoD-ykoC-hmpK	-106	59.5	CGAGATGCCCGGGTG...	DIP0953
Corynebacterium efficiens YS-314
Position: -98 Score: 60.62 Sequence: CGATATTGCACGGGT... Locus tag: CE1134 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: CE1135 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: CE1136 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: CE1137 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK	-98	60.6	CGATATTGCACGGGT...	CE1134
Corynebacterium glutamicum ATCC 13032
Position: -100 Score: 51.03 Sequence: TTCATAGACACGGGT... Locus tag: cg1227 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cg1228 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cg1229 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cg1230 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK	-100	51	TTCATAGACACGGGT...	cg1227
Corynebacterium kroppenstedtii DSM 44385
Position: -163 Score: 47.6 Sequence: CAGTACTTCGCGGGA... Locus tag: ckrop_0610 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: ckrop_0611 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: ckrop_0612 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: ckrop_0613 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK	-163	47.6	CAGTACTTCGCGGGA...	ckrop_0610
Corynebacterium urealyticum DSM 7109
Position: -108 Score: 37.2 Sequence: CCGACCAACGCGGGA... Locus tag: cur_0414 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cur_0415 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cur_0416 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: cur_0417 Name: hmpK Funciton: predicted hydroxymethylpyrimidine kinase
ykoE-ykoD-ykoC-hmpK	-108	37.2	CCGACCAACGCGGGA...	cur_0414