Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rpmA gene

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Anoxybacillus flavithermus WK1
Position: -41
Score: 56.69
Sequence: CCGTGCTACAACCGC...
Locus tag: Aflv_0694
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: Aflv_0695
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: Aflv_0696
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -41 56.7 CCGTGCTACAACCGC... Aflv_0694
Bacillus amyloliquefaciens FZB42
Position: -88
Score: 56.8
Sequence: ACCAATGCTACAACC...
Locus tag: RBAM_025010
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: RBAM_025000
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: RBAM_024990
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -88 56.8 ACCAATGCTACAACC... RBAM_025010
Bacillus cereus ATCC 14579
Position: -93
Score: 58.1
Sequence: CTATATGCTACAACC...
Locus tag: BC4438
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: BC4437
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: BC4436
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -93 58.1 CTATATGCTACAACC... BC4438
Bacillus clausii KSM-K16
Position: -87
Score: 51.9
Sequence: AATGAACTTACAACC...
Locus tag: ABC2602
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: ABC2601
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: ABC2600
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -87 51.9 AATGAACTTACAACC... ABC2602
Bacillus halodurans C-125
Position: -86
Score: 64.14
Sequence: CCAATGACTACAACC...
Locus tag: BH3011
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: BH3010
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: BH3009
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -86 64.1 CCAATGACTACAACC... BH3011
Bacillus licheniformis DSM 13
Position: -88
Score: 61.95
Sequence: ACCCGTGCTACAACC...
Locus tag: BLi02923
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: BLi02922
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: BLi02921
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -88 62 ACCCGTGCTACAACC... BLi02923
Bacillus pumilus SAFR-032
Position: -86
Score: 55.84
Sequence: ACCCGTGCTACAACC...
Locus tag: BPUM_2436
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: BPUM_2435
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: BPUM_2434
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -86 55.8 ACCCGTGCTACAACC... BPUM_2436
Bacillus subtilis subsp. subtilis str. 168
Position: -90
Score: 57.21
Sequence: ACCATTGCTACAACC...
Locus tag: BSU27960
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: BSU27950
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: BSU27940
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -90 57.2 ACCATTGCTACAACC... BSU27960
Geobacillus kaustophilus HTA426
Position: -95
Score: 53.85
Sequence: ACCCGCACTACAACC...
Locus tag: GK2610
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: GK2609
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: GK2608
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -95 53.8 ACCCGCACTACAACC... GK2610
Oceanobacillus iheyensis HTE831
Position: -137
Score: 35.75
Sequence: GCCCGTGCTACAACC...
Locus tag: OB2046
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: OB2045
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: OB2044
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -137 35.8 GCCCGTGCTACAACC... OB2046
Paenibacillus sp. JDR-2
Position: -97
Score: 33.75
Sequence: GGACATGCATGAACC...
Locus tag: Pjdr2_4413
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: Pjdr2_4412
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: Pjdr2_4411
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -97 33.8 GGACATGCATGAACC... Pjdr2_4413
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