Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rplT gene

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Thermotogae
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Fervidobacterium nodosum Rt17-B1
Position: -172
Score: 44.15
Sequence: GTAAAAAGTGGAGGC...
Locus tag: Fnod_0660
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Fnod_0661
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Fnod_0662
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -172 44.2 GTAAAAAGTGGAGGC... Fnod_0660
Petrotoga mobilis SJ95
Position: -177
Score: 27.84
Sequence: AGGTAAAGAGGAAGT...
Locus tag: Pmob_0709
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Pmob_0710
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Pmob_0711
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -177 27.8 AGGTAAAGAGGAAGT... Pmob_0709
Thermosipho africanus TCF52B
Position: -233
Score: 46.43
Sequence: TATAGTAAAGAGGAA...
Locus tag: THA_1200
Name: infC
Funciton: Translation initiation factor 3
Locus tag: THA_1199
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: THA_1198
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -233 46.4 TATAGTAAAGAGGAA... THA_1200
Thermosipho melanesiensis BI429
Position: -225
Score: 38.4
Sequence: TTTTGAAGAGGAAGC...
Locus tag: Tmel_0923
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Tmel_0924
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Tmel_0925
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -225 38.4 TTTTGAAGAGGAAGC... Tmel_0923
Thermotoga lettingae TMO
Position: -84
Score: 31.99
Sequence: AGAGCAAGAGGAAGC...
Locus tag: Tlet_1347
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Tlet_1348
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Tlet_1349
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -84 32 AGAGCAAGAGGAAGC... Tlet_1347
Thermotoga maritima MSB8
Position: -213
Score: 45.97
Sequence: AAAGCAAGTGGAGGC...
Locus tag: TM1590
Name: infC
Funciton: Translation initiation factor 3
Locus tag: TM1591
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: TM1592
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -213 46 AAAGCAAGTGGAGGC... TM1590
Thermotoga naphthophila RKU-10
Position: -137
Score: 45.97
Sequence: AAAAAGCAAGTGGAG...
Locus tag: Tnap_1218
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Tnap_1217
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Tnap_1216
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -137 46 AAAAAGCAAGTGGAG... Tnap_1218
Thermotoga neapolitana DSM 4359
Position: -115
Score: 44.17
Sequence: TAAAAGCAAGTGGAG...
Locus tag: CTN_0869
Name: infC
Funciton: Translation initiation factor 3
Locus tag: CTN_0868
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: CTN_0867
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -115 44.2 TAAAAGCAAGTGGAG... CTN_0869
Thermotoga petrophila RKU-1
Position: -197
Score: 44.06
Sequence: AAAAAGCAAGTGGAG...
Locus tag: Tpet_1203
Name: infC
Funciton: Translation initiation factor 3
Locus tag: Tpet_1202
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: Tpet_1201
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -197 44.1 AAAAAGCAAGTGGAG... Tpet_1203
Thermotoga sp. RQ2
Position: -213
Score: 45.97
Sequence: AAAGCAAGTGGAGGC...
Locus tag: TRQ2_1253
Name: infC
Funciton: Translation initiation factor 3
Locus tag: TRQ2_1254
Name: rpmI
Funciton: LSU ribosomal protein L35p
Locus tag: TRQ2_1255
Name: rplT
Funciton: LSU ribosomal protein L20p
infC-rpmI-rplT -213 46 AAAGCAAGTGGAGGC... TRQ2_1253
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