Orthologous regulated operons containing pyrB gene
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Anoxybacillus flavithermus WK1 | ||||
|
Position: -143
Score: 66.97 Sequence: ACACACCTTTTAAAA...
Locus tag: Aflv_1806
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Aflv_1805
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Aflv_1804
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Aflv_1803
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Aflv_1802
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Aflv_1801
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Aflv_1800
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Aflv_1799
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -143 | 67 | ACACACCTTTTAAAA... | Aflv_1806 |
| Bacillus amyloliquefaciens FZB42 | ||||
|
Position: -141
Score: 72.25 Sequence: AAACCTTTTAAAGAA...
Locus tag: RBAM_015320
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: RBAM_015330
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: RBAM_015340
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: RBAM_015350
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: RBAM_015360
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: RBAM_015370
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: RBAM_015380
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: RBAM_015390
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -141 | 72.2 | AAACCTTTTAAAGAA... | RBAM_015320 |
| Bacillus cereus ATCC 14579 | ||||
|
Position: -156
Score: 49.82 Sequence: AATAACCTTTTAATT...
Locus tag: BC3889
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BC3888
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BC3887
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BC3886
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BC3885
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BC3884
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BC3883
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BC3882
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -156 | 49.8 | AATAACCTTTTAATT... | BC3889 |
| Bacillus clausii KSM-K16 | ||||
|
Position: -139
Score: 66.32 Sequence: AACCCTCTTTAAACG...
Locus tag: ABC2337
Name: pyrP Funciton: Uracil permease
Locus tag: ABC2336
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: ABC2335
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: ABC2334
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: ABC2333
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: ABC2332
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: ABC2331
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: ABC2330
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: ABC2329
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrP-pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -139 | 66.3 | AACCCTCTTTAAACG... | ABC2337 |
| Bacillus halodurans C-125 | ||||
|
Position: -223
Score: 35.81 Sequence: ATCGACCTTTAATGA...
Locus tag: BH2539
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BH2538
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BH2537
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BH2536
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BH2535
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BH2534
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BH2533
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BH2532
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -223 | 35.8 | ATCGACCTTTAATGA... | BH2539 |
| Bacillus licheniformis DSM 13 | ||||
|
Position: -143
Score: 71.72 Sequence: AAACCTTTTAAATGA...
Locus tag: BLi01769
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BLi01770
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BLi01771
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BLi01772
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BLi01773
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BLi01774
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BLi01775
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BLi01776
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -143 | 71.7 | AAACCTTTTAAATGA... | BLi01769 |
| Bacillus pumilus SAFR-032 | ||||
|
Position: -154
Score: 63.86 Sequence: AAACCTTTTAAAAGA...
Locus tag: BPUM_1448
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BPUM_1449
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BPUM_1450
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BPUM_1451
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BPUM_1452
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BPUM_1453
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BPUM_1454
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BPUM_1455
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -154 | 63.9 | AAACCTTTTAAAAGA... | BPUM_1448 |
| Bacillus subtilis subsp. subtilis str. 168 | ||||
|
Position: -146
Score: 80.67 Sequence: AAACCTTTTAATGAA...
Locus tag: BSU15490
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BSU15500
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BSU15510
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BSU15520
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BSU15530
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BSU15540
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BSU15550
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BSU15560
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -146 | 80.7 | AAACCTTTTAATGAA... | BSU15490 |
| Geobacillus kaustophilus HTA426 | ||||
|
Position: -160
Score: 64.48 Sequence: GCACCTTTTAATTAA...
Locus tag: GK1149
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: GK1150
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: GK1151
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: GK1152
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: GK1153
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: GK1154
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: GK1155
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: GK1156
Name: null Funciton: Hypothetical protein
Locus tag: GK1157
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-GK1156-pyrE | -160 | 64.5 | GCACCTTTTAATTAA... | GK1149 |
| Oceanobacillus iheyensis HTE831 | ||||
|
Position: -165
Score: 53.4 Sequence: CAGCTTTTAATCAAA...
Locus tag: OB1488
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: OB1489
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: OB1490
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: OB1491
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: OB1492
Name: pyrK Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: OB1493
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: OB1494
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: OB1495
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
||||
| pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE | -165 | 53.4 | CAGCTTTTAATCAAA... | OB1488 |
| Paenibacillus sp. JDR-2 | ||||
|
Position: -229
Score: 60.22 Sequence: CAGTACCTTTAAATC...
Locus tag: Pjdr2_3865
Name: pyrR Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Locus tag: Pjdr2_3864
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Pjdr2_3863
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Pjdr2_3862
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Pjdr2_3861
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Pjdr2_3860
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Pjdr2_3859
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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| pyrR-pyrB-pyrC-carA-carB-pyrF-pyrE | -229 | 60.2 | CAGTACCTTTAAATC... | Pjdr2_3865 |