Orthologous regulated operons containing cobT gene
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -250
Score: 61.05 Sequence: CGGTCATTCACGCCA...
Locus tag: Sama_0760
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sama_0761
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sama_0762
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sama_0763
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sama_0764
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sama_0765
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sama_0766
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -250 | 61 | CGGTCATTCACGCCA... | Sama_0760 |
| Shewanella baltica OS155 | ||||
|
Position: -266
Score: 53.55 Sequence: TGCCGAGGCACACTG...
Locus tag: Sbal_3366
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sbal_3365
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sbal_3364
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sbal_3363
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sbal_3362
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sbal_3361
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sbal_3360
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -266 | 53.5 | TGCCGAGGCACACTG... | Sbal_3366 |
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -211
Score: 43.37 Sequence: ATCTGCGTCGTAACC...
Locus tag: Sfri_0874
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sfri_0875
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sfri_0876
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sfri_0877
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sfri_0878
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sfri_0879
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sfri_0880
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -211 | 43.4 | ATCTGCGTCGTAACC... | Sfri_0874 |
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -283
Score: 42.95 Sequence: TAAATAAGAATGAAA...
Locus tag: Shal_3460
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Shal_3459
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Shal_3458
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Shal_3457
Name: null Funciton: hypothetical protein
Locus tag: Shal_3456
Name: cobS Funciton: Cobalamin synthase
Locus tag: Shal_3455
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Shal_3454
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Shal_3453
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-Shal_3457-cobS-cobU-cbiP-btuR | -283 | 43 | TAAATAAGAATGAAA... | Shal_3460 |
| Shewanella loihica PV-4 | ||||
|
Position: -281
Score: 52.35 Sequence: GCCTGCGCCGGGAGT...
Locus tag: Shew_0712
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Shew_0713
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Shew_0714
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Shew_0715
Name: cobS Funciton: Cobalamin synthase
Locus tag: Shew_0716
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Shew_0717
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Shew_0718
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -281 | 52.3 | GCCTGCGCCGGGAGT... | Shew_0712 |
| Shewanella oneidensis MR-1 | ||||
|
Position: -475
Score: 57.83 Sequence: TAAATGTCGCAGAAA...
Locus tag: SO_1033
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: SO_1034
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: SO_1035
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: SO_1036
Name: cobS Funciton: Cobalamin synthase
Locus tag: SO_1037
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: SO_1038
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: SO_1039
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -475 | 57.8 | TAAATGTCGCAGAAA... | SO_1033 |
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -272
Score: 45.22 Sequence: AGCTTATAATAAAAA...
Locus tag: Spea_3382
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Spea_3381
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Spea_3380
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Spea_3379
Name: cobS Funciton: Cobalamin synthase
Locus tag: Spea_3378
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Spea_3377
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Spea_3376
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -272 | 45.2 | AGCTTATAATAAAAA... | Spea_3382 |
| Shewanella piezotolerans WP3 | ||||
|
Position: -204
Score: 42.75 Sequence: AAACTAAATTTGAGT...
Locus tag: swp_0994
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: swp_0995
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: swp_0996
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: swp_0997
Name: cobS Funciton: Cobalamin synthase
Locus tag: swp_0998
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: swp_0999
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: swp_1000
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -204 | 42.8 | AAACTAAATTTGAGT... | swp_0994 |
| Shewanella putrefaciens CN-32 | ||||
|
Position: -355
Score: 59.91 Sequence: CCATAACGTCGCAGA...
Locus tag: Sputcn32_2963
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sputcn32_2962
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sputcn32_2961
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sputcn32_2960
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sputcn32_2959
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sputcn32_2958
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sputcn32_2957
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -355 | 59.9 | CCATAACGTCGCAGA... | Sputcn32_2963 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -534
Score: 59.1 Sequence: GGAGAGGATCGCAAA...
Locus tag: Ssed_3736
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Ssed_3735
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Ssed_3734
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Ssed_3733
Name: cobS Funciton: Cobalamin synthase
Locus tag: Ssed_3732
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Ssed_3731
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Ssed_3730
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -534 | 59.1 | GGAGAGGATCGCAAA... | Ssed_3736 |
| Shewanella sp ANA-3 | ||||
|
Position: -348
Score: 58.5 Sequence: CTCAAAGGTCGCAGA...
Locus tag: Shewana3_3280
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Shewana3_3279
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Shewana3_3278
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Shewana3_3277
Name: cobS Funciton: Cobalamin synthase
Locus tag: Shewana3_3276
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Shewana3_3275
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Shewana3_3274
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: Shewana3_3273
Name: Shewana3_3273 Funciton: Hypothetical protein
Locus tag: Shewana3_3272
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR-Shewana3_3273-btuF | -348 | 58.5 | CTCAAAGGTCGCAGA... | Shewana3_3280 |
| Shewanella sp MR-4 | ||||
|
Position: -345
Score: 59.44 Sequence: CAAAGGTCGCAGAAA...
Locus tag: Shewmr4_0840
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Shewmr4_0841
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Shewmr4_0842
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Shewmr4_0843
Name: cobS Funciton: Cobalamin synthase
Locus tag: Shewmr4_0844
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Shewmr4_0845
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Shewmr4_0846
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: Shewmr4_0847
Name: Shewmr4_0847 Funciton: Hypothetical protein
Locus tag: Shewmr4_0848
Name: null Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR-Shewmr4_0847-Shewmr4_0848 | -345 | 59.4 | CAAAGGTCGCAGAAA... | Shewmr4_0840 |
| Shewanella sp MR-7 | ||||
|
Position: -347
Score: 59.31 Sequence: CTCAAAGGTCGCAGA...
Locus tag: Shewmr7_3182
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Shewmr7_3181
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Shewmr7_3180
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Shewmr7_3179
Name: cobS Funciton: Cobalamin synthase
Locus tag: Shewmr7_3178
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Shewmr7_3177
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Shewmr7_3176
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: Shewmr7_3175
Name: Shewmr7_3175 Funciton: Hypothetical protein
Locus tag: Shewmr7_3174
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR-Shewmr7_3175-btuF | -347 | 59.3 | CTCAAAGGTCGCAGA... | Shewmr7_3182 |
| Shewanella sp W3-18-1 | ||||
|
Position: -339
Score: 60.72 Sequence: ATAACGTCGCAGAAA...
Locus tag: Sputw3181_0984
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Sputw3181_0985
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Sputw3181_0986
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Sputw3181_0987
Name: cobS Funciton: Cobalamin synthase
Locus tag: Sputw3181_0988
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Sputw3181_0989
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Sputw3181_0990
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -339 | 60.7 | ATAACGTCGCAGAAA... | Sputw3181_0984 |
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -401
Score: 44.14 Sequence: AGGCAGATCCGCAAA...
Locus tag: Swoo_4086
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Swoo_4085
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Swoo_4084
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Swoo_4083
Name: cobS Funciton: Cobalamin synthase
Locus tag: Swoo_4082
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Swoo_4081
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Swoo_4080
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
||||
| btuD-btuC-cobT-cobS-cobU-cbiP-btuR | -401 | 44.1 | AGGCAGATCCGCAAA... | Swoo_4086 |