Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing omp_thi gene

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -158
Score: 68.99
Sequence: GCGGCGCCAAGGGGT...
Locus tag: Sama_1451
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sama_1452
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sama_1453
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sama_1454
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -158 69 GCGGCGCCAAGGGGT... Sama_1451
Shewanella baltica OS155
Position: -179
Score: 72.16
Sequence: GCGTCGCCAAGGGGT...
Locus tag: Sbal_1802
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sbal_1803
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sbal_1804
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sbal_1805
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -179 72.2 GCGTCGCCAAGGGGT... Sbal_1802
Shewanella denitrificans OS217
Position: -164
Score: 71.4
Sequence: CCCTCGCGCCAAGGG...
Locus tag: Sden_2321
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sden_2320
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sden_2319
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sden_2318
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -164 71.4 CCCTCGCGCCAAGGG... Sden_2321
Shewanella frigidimarina NCIMB 400
Position: -164
Score: 72.01
Sequence: TGGCCGCCAAGGGGT...
Locus tag: Sfri_1526
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sfri_1527
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sfri_1528
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sfri_1529
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -164 72 TGGCCGCCAAGGGGT... Sfri_1526
Shewanella halifaxensis HAW-EB4
Position: -184
Score: 66.42
Sequence: CGCGCTCGCCAAGGG...
Locus tag: Shal_2461
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shal_2460
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shal_2459
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Shal_2458
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -184 66.4 CGCGCTCGCCAAGGG... Shal_2461
Shewanella loihica PV-4
Position: -192
Score: 69.39
Sequence: GCCTCGCCAAGGGGT...
Locus tag: Shew_1735
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shew_1736
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shew_1737
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Shew_1738
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -192 69.4 GCCTCGCCAAGGGGT... Shew_1735
Shewanella oneidensis MR-1
Position: -164
Score: 67.63
Sequence: AAGCGCCGCCAAGGG...
Locus tag: SO_2715
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: SO_2714
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: SO_2713
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: SO_2712
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -164 67.6 AAGCGCCGCCAAGGG... SO_2715
Shewanella pealeana ATCC 700345
Position: -182
Score: 66.82
Sequence: CGCTCGCCAAGGGGT...
Locus tag: Spea_1828
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Spea_1829
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Spea_1830
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Spea_1831
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -182 66.8 CGCTCGCCAAGGGGT... Spea_1828
Shewanella piezotolerans WP3
Position: -183
Score: 69.13
Sequence: CGGCGGTGCCAAGGG...
Locus tag: swp_2907
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: swp_2906
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: swp_2905
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: swp_2904
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -183 69.1 CGGCGGTGCCAAGGG... swp_2907
Shewanella putrefaciens CN-32
Position: -181
Score: 67.56
Sequence: GCGCCGCCAAGGGGT...
Locus tag: Sputcn32_1660
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sputcn32_1661
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sputcn32_1662
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sputcn32_1663
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -181 67.6 GCGCCGCCAAGGGGT... Sputcn32_1660
Shewanella sediminis HAW-EB3
Position: -186
Score: 67.53
Sequence: TGCCGGCGCCAAGGG...
Locus tag: Ssed_2752
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Ssed_2751
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Ssed_2750
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Ssed_2749
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -186 67.5 TGCCGGCGCCAAGGG... Ssed_2752
Shewanella sp ANA-3
Position: -165
Score: 67.26
Sequence: TAGCGCCGCCAAGGG...
Locus tag: Shewana3_2500
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shewana3_2499
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shewana3_2498
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Shewana3_2497
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -165 67.3 TAGCGCCGCCAAGGG... Shewana3_2500
Shewanella sp MR-4
Position: -165
Score: 67.26
Sequence: TAGCGCCGCCAAGGG...
Locus tag: Shewmr4_2310
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shewmr4_2309
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shewmr4_2308
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Shewmr4_2307
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -165 67.3 TAGCGCCGCCAAGGG... Shewmr4_2310
Shewanella sp MR-7
Position: -165
Score: 67.26
Sequence: TAGCGCCGCCAAGGG...
Locus tag: Shewmr7_2380
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shewmr7_2379
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shewmr7_2378
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Shewmr7_2377
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -165 67.3 TAGCGCCGCCAAGGG... Shewmr7_2380
Shewanella sp W3-18-1
Position: -183
Score: 67.56
Sequence: AAGCGCCGCCAAGGG...
Locus tag: Sputw3181_2365
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Sputw3181_2364
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Sputw3181_2363
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Sputw3181_2362
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -183 67.6 AAGCGCCGCCAAGGG... Sputw3181_2365
Shewanella woodyi ATCC 51908
Position: -188
Score: 70.5
Sequence: CCGGCGCCAAGGGGT...
Locus tag: Swoo_1886
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Swoo_1887
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Swoo_1888
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Swoo_1889
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi-ykoF-pnuT-thiK -188 70.5 CCGGCGCCAAGGGGT... Swoo_1886
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