Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ribD gene

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Thermotogae
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Fervidobacterium nodosum Rt17-B1
Position: -239
Score: 119.85
Sequence: GGTACTCTCGGGGCA...
Locus tag: Fnod_1415
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Fnod_1416
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Fnod_1417
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Fnod_1418
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -239 119.8 GGTACTCTCGGGGCA... Fnod_1415
Thermosipho melanesiensis BI429
Position: -46
Score: 119.46
Sequence: TGCTATATGCATTTA...
Locus tag: Tmel_0045
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Tmel_0044
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Tmel_0043
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Tmel_0042
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -46 119.5 TGCTATATGCATTTA... Tmel_0045
Thermotoga maritima MSB8
Position: -61
Score: 115.06
Sequence: GATGTGGAGGTTATA...
Locus tag: TM1828
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: TM1827
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: TM1826
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: TM1825
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: TM1824
Name: null
Funciton: glycosyl transferase family protein
ribD-ribE-ribBA-ribH-TM1824 -61 115.1 GATGTGGAGGTTATA... TM1828
Thermotoga naphthophila RKU-10
Position: -180
Score: 115.06
Sequence: AACGCTCTCGGGGCA...
Locus tag: Tnap_0999
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Tnap_1000
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Tnap_1001
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Tnap_1002
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: Tnap_1003
Name: null
Funciton: glycosyl transferase family protein
ribD-ribE-ribBA-ribH-Tnap_1003 -180 115.1 AACGCTCTCGGGGCA... Tnap_0999
Thermotoga neapolitana DSM 4359
Position: -60
Score: 112.35
Sequence: AGAGTGTAGACCATC...
Locus tag: CTN_0760
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: CTN_0759
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: CTN_0758
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: CTN_0757
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: CTN_0756
Name: null
Funciton: glycosyl transferase family protein
ribD-ribE-ribBA-ribH-CTN_0756 -60 112.3 AGAGTGTAGACCATC... CTN_0760
Thermotoga petrophila RKU-1
Position: -61
Score: 115.06
Sequence: GATGTGGAGATTATA...
Locus tag: Tpet_1113
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Tpet_1112
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Tpet_1111
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Tpet_1110
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: Tpet_1109
Name: null
Funciton: glycosyl transferase family protein
ribD-ribE-ribBA-ribH-Tpet_1109 -61 115.1 GATGTGGAGATTATA... Tpet_1113
Thermotoga sp. RQ2
Position: -180
Score: 115.06
Sequence: AACGCTCTCGGGGCA...
Locus tag: TRQ2_0993
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: TRQ2_0994
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: TRQ2_0995
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: TRQ2_0996
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: TRQ2_0997
Name: null
Funciton: glycosyl transferase family protein
ribD-ribE-ribBA-ribH-TRQ2_0997 -180 115.1 AACGCTCTCGGGGCA... TRQ2_0993
Thermotogales bacterium TBF 19.5.1
Position: -208
Score: 119.79
Sequence: AAATTCTCCGGGGCA...
Locus tag: Kole_1231
Name: ribD
Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: Kole_1232
Name: ribE
Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
Locus tag: Kole_1233
Name: ribBA
Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: Kole_1234
Name: ribH
Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribD-ribE-ribBA-ribH -208 119.8 AAATTCTCCGGGGCA... Kole_1231
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