Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing metF gene

Properties
Regulator type: RNA regulatory element
Name: SAH_riboswitch
RFAM: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria/Beta
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azoarcus sp. EbN1
Position: -139
Score: 47.98
Sequence: CTGCCGAGGAGCGCT...
Locus tag: ebA1874
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: ebA1875
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-metF -139 48 CTGCCGAGGAGCGCT... ebA1874
Chromobacterium violaceum ATCC 12472
Position: -160
Score: 29.14
Sequence: CCGAGGAGCGCTGCG...
Locus tag: CV0965
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: CV0966
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-metF -160 29.1 CCGAGGAGCGCTGCG... CV0965
Dechloromonas aromatica RCB
Position: -144
Score: 45.68
Sequence: ACCTACCGAGGGGCG...
Locus tag: Daro_0186
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Daro_0185
Name: PF04020
Funciton: Predicted membrane protein
Locus tag: Daro_0184
Name: COG1189
Funciton: S-adenosyl-L-methionine-dependent RNA binding methyltransferase
Locus tag: Daro_0183
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-PF04020-COG1189-metF -144 45.7 ACCTACCGAGGGGCG... Daro_0186
Methylobacillus flagellatus KT
Position: -197
Score: 44.64
Sequence: CTCTACCGAGGAACG...
Locus tag: Mfla_0193
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Mfla_0192
Name: PF04020
Funciton: Predicted membrane protein
Locus tag: Mfla_0191
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-PF04020-metF -197 44.6 CTCTACCGAGGAACG... Mfla_0193
Methylophilales bacterium HTCC2181
Position: -138
Score: 30.69
Sequence: TATTACCGAGGAACG...
Locus tag: MB2181_00490
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: MB2181_00485
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-metF -138 30.7 TATTACCGAGGAACG... MB2181_00490
Methylotenera mobilis JLW8
Position: -169
Score: 39.78
Sequence: TACTTCTGAGGGGCG...
Locus tag: Mmol_2191
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Mmol_2190
Name: PF04020
Funciton: Predicted membrane protein
Locus tag: Mmol_2189
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-PF04020-metF -169 39.8 TACTTCTGAGGGGCG... Mmol_2191
Nitrosomonas europaea ATCC 19718
Position: -93
Score: 46.21
Sequence: GGTACCGAGGAGCGC...
Locus tag: NE0660
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: NE0661
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-metF -93 46.2 GGTACCGAGGAGCGC... NE0660
Nitrosospira multiformis ATCC 25196
Position: -95
Score: 59.29
Sequence: CCAGACCGAGGAGCG...
Locus tag: Nmul_A2540
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Nmul_A2539
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-metF -95 59.3 CCAGACCGAGGAGCG... Nmul_A2540
Thauera sp. MZ1T
Position: -142
Score: 17.24
Sequence: CGCCCTGCGGCGGGT...
Locus tag: Tmz1t_3842
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Tmz1t_3843
Name: COG1189
Funciton: S-adenosyl-L-methionine-dependent RNA binding methyltransferase
Locus tag: Tmz1t_3844
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-COG1189-metF -142 17.2 CGCCCTGCGGCGGGT... Tmz1t_3842
Thiobacillus denitrificans
Position: 9
Score: 58.48
Sequence: CGGTTCCGAGGAGCG...
Locus tag: Tbd_2519
Name: ahcY
Funciton: Adenosylhomocysteinase (EC 3.3.1.1)
Locus tag: Tbd_2518
Name: PF04020
Funciton: Predicted membrane protein
Locus tag: Tbd_2517
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
ahcY-PF04020-metF 9 58.5 CGGTTCCGAGGAGCG... Tbd_2519
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