Orthologous regulated operons containing ykoE gene

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Actinobacteria

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Bifidobacterium adolescentis ATCC 15703
Position: -135 Score: 55.85 Sequence: CAGGCGCAGACACGG... Locus tag: BAD_0950 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BAD_0949 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BAD_0948 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC	-135	55.8	CAGGCGCAGACACGG...	BAD_0950
Bifidobacterium angulatum DSM 20098
Position: -125 Score: 46.26 Sequence: GGCAATGACACGGGA... Locus tag: BIFANG_01019 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BIFANG_01020 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BIFANG_01021 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC	-125	46.3	GGCAATGACACGGGA...	BIFANG_01019
Bifidobacterium animalis subsp. lactis AD011
Position: -134 Score: 57.76 Sequence: TCGATGTAGACACGG... Locus tag: BLA_1225 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE	-134	57.8	TCGATGTAGACACGG...	BLA_1225
Bifidobacterium breve DSM 20213
Position: -170 Score: 46.26 Sequence: GGAGTTGACACGGGA... Locus tag: BIFBRE_00957 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BIFBRE_00958 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BIFBRE_00959 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC	-170	46.3	GGAGTTGACACGGGA...	BIFBRE_00957
Bifidobacterium dentium Bd1
Position: -134 Score: 55.9 Sequence: CTGTCACAGACACGG... Locus tag: BDP_1328 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BDP_1327 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BDP_1326 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC	-134	55.9	CTGTCACAGACACGG...	BDP_1328
Bifidobacterium gallicum DSM 20093
Position: -271 Score: 51.06 Sequence: CGTCAACCGACACGG... Locus tag: BIFGAL_01797 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE	-271	51.1	CGTCAACCGACACGG...	BIFGAL_01797
Bifidobacterium longum NCC2705
Position: -212 Score: 47.99 Sequence: GGGAGTTGACACGGG... Locus tag: BL1071 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BL1070 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BL1069 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoD-ykoC	-212	48	GGGAGTTGACACGGG...	BL1071
Gardnerella vaginalis 409-05
Position: -288 Score: 50.1 Sequence: TCAATCGACACGGGT... Locus tag: HMPREF0424_0412 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: HMPREF0424_0414 Name: ykoDC Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine / Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE-ykoDC	-288	50.1	TCAATCGACACGGGT...	HMPREF0424_0412

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Orthologous regulated operons containing ykoE gene

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --