Orthologous regulated operons containing ykoD gene
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Actinobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | ||||
|
Position: -135
Score: 55.85 Sequence: CAGGCGCAGACACGG...
Locus tag: BAD_0950
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BAD_0949
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BAD_0948
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD-ykoC | -135 | 55.8 | CAGGCGCAGACACGG... | BAD_0950 |
| Bifidobacterium angulatum DSM 20098 | ||||
|
Position: -125
Score: 46.26 Sequence: GGCAATGACACGGGA...
Locus tag: BIFANG_01019
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFANG_01020
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFANG_01021
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD-ykoC | -125 | 46.3 | GGCAATGACACGGGA... | BIFANG_01019 |
| Bifidobacterium animalis subsp. lactis AD011 | ||||
|
Position: -146
Score: 52.85 Sequence: GGCATCGACACGGGA...
Locus tag: BLA_1236
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BLA_1237
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD | -146 | 52.8 | GGCATCGACACGGGA... | BLA_1236 |
| Bifidobacterium breve DSM 20213 | ||||
|
Position: -170
Score: 46.26 Sequence: GGAGTTGACACGGGA...
Locus tag: BIFBRE_00957
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00958
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00959
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD-ykoC | -170 | 46.3 | GGAGTTGACACGGGA... | BIFBRE_00957 |
| Bifidobacterium dentium Bd1 | ||||
|
Position: -134
Score: 55.9 Sequence: CTGTCACAGACACGG...
Locus tag: BDP_1328
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BDP_1327
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BDP_1326
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD-ykoC | -134 | 55.9 | CTGTCACAGACACGG... | BDP_1328 |
| Bifidobacterium longum NCC2705 | ||||
|
Position: -212
Score: 47.99 Sequence: GGGAGTTGACACGGG...
Locus tag: BL1071
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BL1070
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BL1069
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoD-ykoC | -212 | 48 | GGGAGTTGACACGGG... | BL1071 |
| Gardnerella vaginalis 409-05 | ||||
|
Position: -288
Score: 50.1 Sequence: TCAATCGACACGGGT...
Locus tag: HMPREF0424_0412
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: HMPREF0424_0414
Name: ykoDC Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine / Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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| ykoE-ykoDC | -288 | 50.1 | TCAATCGACACGGGT... | HMPREF0424_0412 |