Orthologous regulated operons containing rplU gene
| Regulator type: | RNA regulatory element |
| Name: | L21_leader |
| RFAM: | RF00559 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||||
|
Position: -90
Score: 28.79 Sequence: CACATGTAGACCGCA...
Locus tag: CAC1257
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CAC1258
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CAC1259
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -90 | 28.8 | CACATGTAGACCGCA... | CAC1257 |
| Clostridium bartlettii DSM 16795 | ||||
|
Position: -89
Score: 27.71 Sequence: TTAATAACTGTAATG...
Locus tag: CLOBAR_01486
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLOBAR_01485
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOBAR_01484
Name: rpmA Funciton: LSU ribosomal protein L27p |
||||
| rplU-ysxB-rpmA | -89 | 27.7 | TTAATAACTGTAATG... | CLOBAR_01486 |
| Clostridium botulinum A str. ATCC 3502 | ||||
|
Position: -85
Score: 31.97 Sequence: GGCTTTTGTAGACCG...
Locus tag: CBO2989
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CBO2988
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CBO2987
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -85 | 32 | GGCTTTTGTAGACCG... | CBO2989 |
| Clostridium butyricum 5521 | ||||
|
Position: -80
Score: 20.28 Sequence: GCACACGTAAGGTTT...
Locus tag: CBY_4003
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CBY_4004
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CBY_4005
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -80 | 20.3 | GCACACGTAAGGTTT... | CBY_4003 |
| Clostridium difficile 630 | ||||
|
Position: -87
Score: 32.99 Sequence: AATAATTGTAATGCC...
Locus tag: CD1161
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CD1162
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CD1163
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -87 | 33 | AATAATTGTAATGCC... | CD1161 |
| Clostridium hiranonis DSM 13275 | ||||
|
Position: -82
Score: 31.3 Sequence: AATAACTGTAATGCC...
Locus tag: CLOHIR_01973
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLOHIR_01974
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOHIR_01975
Name: rpmA Funciton: LSU ribosomal protein L27p |
||||
| rplU-ysxB-rpmA | -82 | 31.3 | AATAACTGTAATGCC... | CLOHIR_01973 |
| Clostridium kluyveri DSM 555 | ||||
|
Position: -95
Score: 26.79 Sequence: GACAGCTGTAGACCG...
Locus tag: CKL_0879
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CKL_0880
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CKL_0881
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -95 | 26.8 | GACAGCTGTAGACCG... | CKL_0879 |
| Clostridium leptum DSM 753 | ||||
|
Position: -88
Score: 24.29 Sequence: ATCATTGATAAGCCG...
Locus tag: CLOLEP_02654
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLOLEP_02655
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOLEP_02656
Name: rpmA Funciton: LSU ribosomal protein L27p |
||||
| rplU-ysxB-rpmA | -88 | 24.3 | ATCATTGATAAGCCG... | CLOLEP_02654 |
| Clostridium nexile DSM 1787 | ||||
|
Position: -73
Score: 26.36 Sequence: CCGCACAATGAGGTT...
Locus tag: CLONEX_01673
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLONEX_01672
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLONEX_01671
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -73 | 26.4 | CCGCACAATGAGGTT... | CLONEX_01673 |
| Clostridium novyi NT | ||||
|
Position: -89
Score: 22.54 Sequence: GGCATTTGTAAACCG...
Locus tag: NT01CX_0081
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: NT01CX_0080
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: NT01CX_0079
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -89 | 22.5 | GGCATTTGTAAACCG... | NT01CX_0081 |
| Clostridium perfringens ATCC 13124 | ||||
|
Position: -89
Score: 27.02 Sequence: GGCTTTTGTAAACCG...
Locus tag: CPF_2385
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CPF_2384
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CPF_2383
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -89 | 27 | GGCTTTTGTAAACCG... | CPF_2385 |
| Clostridium scindens ATCC 35704 | ||||
|
Position: -79
Score: 24.55 Sequence: CCAGTATGCCGCACA...
Locus tag: CLOSCI_00483
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLOSCI_00484
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOSCI_00485
Name: rpmA Funciton: LSU ribosomal protein L27p |
||||
| rplU-ysxB-rpmA | -79 | 24.5 | CCAGTATGCCGCACA... | CLOSCI_00483 |
| Clostridium sp. L2-50 | ||||
|
Position: -86
Score: 24.41 Sequence: TACTAGTGTGCCGCA...
Locus tag: CLOL250_00205
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CLOL250_00204
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOL250_00203
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -86 | 24.4 | TACTAGTGTGCCGCA... | CLOL250_00205 |
| Clostridium sp. OhILAs | ||||
|
Position: -81
Score: 17.65 Sequence: TATCTGTAGGTAGCC...
Locus tag: Clos_1753
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: Clos_1752
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: Clos_1751
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -81 | 17.6 | TATCTGTAGGTAGCC... | Clos_1753 |
| Clostridium tetani E88 | ||||
|
Position: -87
Score: 35.12 Sequence: ATGGCATTTGTAAGC...
Locus tag: CTC02060
Name: rplU Funciton: LSU ribosomal protein L21p
Locus tag: CTC02059
Name: ysxB Funciton: FIG139598: Potential ribosomal protein
Locus tag: CTC02058
Name: rpmA Funciton: LSU ribosomal protein L27p |
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| rplU-ysxB-rpmA | -87 | 35.1 | ATGGCATTTGTAAGC... | CTC02060 |