Regulon of NikR in Desulfovibrio desulfuricans G20

Properties
Regulator type:	Transcription factor
TF locus tag:	Dde_2956
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Regulog:	NikR - Desulfovibrionales
Statistics of regulated genes:
- Genes	9
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By trascription factor - NikR
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Regulated operons
	Locus Tag	Name	Function
Position: -65 Score: 5.7 Sequence: GTCTCAG-(13)-GTAAAAC Locus tag: Dde_2134 Name: hysB Funciton: [Ni/Fe] hydrogenase, group 1, small subunit Locus tag: Dde_2135 Name: hysA Funciton: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
	Dde_2134	hysB	[Ni/Fe] hydrogenase, group 1, small subunit
	Dde_2135	hysA	[Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
Position: -122 Score: 5.2 Sequence: GTGGTAG-(13)-ATAGCAC Position: -82 Score: 7.4 Sequence: GTATTAC-(13)-GTAACAC Locus tag: Dde_2281 Name: hydA2 Funciton: Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2) Locus tag: Dde_2280 Name: hydB2 Funciton: Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)
	Dde_2281	hydA2	Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)
	Dde_2280	hydB2	Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)
Position: -105 Score: 7.3 Sequence: GTGTTAT-(13)-GTAACAC Locus tag: Dde_1189 Name: nikK Funciton: Additional periplasmic component NikK of nickel ECF transporter Locus tag: Dde_1190 Name: nikM Funciton: Substrate-specific component NikM of nickel ECF transporter Locus tag: Dde_1191 Name: nikL Funciton: Additional component NikL of nickel ECF transporter Locus tag: Dde_1192 Name: nikQ Funciton: Transmembrane component NikQ of energizing module of nickel ECF transporter Locus tag: Dde_1193 Name: nikO Funciton: ATPase component NikO of energizing module of nickel ECF transporter
	Dde_1189	nikK	Additional periplasmic component NikK of nickel ECF transporter
	Dde_1190	nikM	Substrate-specific component NikM of nickel ECF transporter
	Dde_1191	nikL	Additional component NikL of nickel ECF transporter
	Dde_1192	nikQ	Transmembrane component NikQ of energizing module of nickel ECF transporter
	Dde_1193	nikO	ATPase component NikO of energizing module of nickel ECF transporter

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD