Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Rhodobacter sphaeroides 2.4.1

Properties
Regulator type: Transcription factor
TF locus tag: RSP_0547
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhodobacterales
Statistics of regulated genes:
- Genes 26
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -237
Score: 4.4
Sequence: GGGCGGAACCCCGACA
Position: -217
Score: 5.3
Sequence: TGTCGGGAACGCGACA
Position: -70
Score: 4
Sequence: TGACAGATGTGCGACA
Locus tag: RSP_3192
Name: rnfA
Funciton: Electron transport complex protein RnfA
Locus tag: RSP_3193
Name: rnfB
Funciton: Electron transport complex protein RnfB
Locus tag: RSP_3194
Name: rnfC
Funciton: Electron transport complex protein RnfC
Locus tag: RSP_3195
Name: rnfD
Funciton: Electron transport complex protein RnfD
Locus tag: RSP_3196
Name: rnfG
Funciton: Electron transport complex protein RnfG
Locus tag: RSP_3197
Name: rnfE
Funciton: Electron transport complex protein RnfE
Locus tag: RSP_3198
Name: rnfH
Funciton: Electron transport complex protein RnfH
RSP_3192
rnfA
Electron transport complex protein RnfA
RSP_3193
rnfB
Electron transport complex protein RnfB
RSP_3194
rnfC
Electron transport complex protein RnfC
RSP_3195
rnfD
Electron transport complex protein RnfD
RSP_3196
rnfG
Electron transport complex protein RnfG
RSP_3197
rnfE
Electron transport complex protein RnfE
RSP_3198
rnfH
Electron transport complex protein RnfH
Position: -227
Score: 5
Sequence: GGTCGCAAGTCCGACA
Position: -206
Score: 4.7
Sequence: GGTCGGGATTGCGACG
Locus tag: RSP_2501
Name: modD
Funciton: Molybdenum transport system protein ModD
RSP_2501
modD
Molybdenum transport system protein ModD
Position: -343
Score: 4
Sequence: TGCGGCATGCGCCACA
Locus tag: RSP_2791
Name: RSP_2791
Funciton: Predicted GTP cyclohydrolase I
Locus tag: RSP_2790
Name: RSP_2790
Funciton: Hypothetical protein
RSP_2791
RSP_2791
Predicted GTP cyclohydrolase I
RSP_2790
RSP_2790
Hypothetical protein
Position: -145
Score: 4.8
Sequence: TGTCGCGAACCCGTCA
Position: -128
Score: 3.7
Sequence: TGTCGGATTCCCTCCG
Locus tag: RSP_0532
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: RSP_0531
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: RSP_0530
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: RSP_0529
Name: nifV
Funciton: Homocitrate synthase (EC 2.3.3.14)
Locus tag: RSP_0528
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
Locus tag: RSP_0527
Name: rpoN
Funciton: RNA polymerase sigma-54 factor RpoN
RSP_0532
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
RSP_0531
nifU
Iron-sulfur cluster assembly scaffold protein NifU
RSP_0530
nifS
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
RSP_0529
nifV
Homocitrate synthase (EC 2.3.3.14)
RSP_0528
nifW
Nitrogenase stabilizing/protective protein NifW
RSP_0527
rpoN
RNA polymerase sigma-54 factor RpoN
Position: -142
Score: 5.2
Sequence: TGTCGCAGATGCGACA
Locus tag: RSP_0538
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: RSP_0537
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: RSP_0536
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: RSP_0535
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RSP_0534
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: RSP_0533
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
RSP_0538
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
RSP_0537
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
RSP_0536
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
RSP_0535
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
RSP_0534
fdxB
Nitrogenase specific ferredoxin III protein FdxB
RSP_0533
nifQ
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
Position: -178
Score: 4.3
Sequence: TGTCGGTTTTCGCACA
Locus tag: RSP_0541
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: RSP_0540
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: RSP_0539
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
RSP_0541
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
RSP_0540
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
RSP_0539
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Position: -122
Score: 5.2
Sequence: TGTCGCATTTGCGACC
Position: -38
Score: 4.6
Sequence: TCTCCGAAATCCGACA
Locus tag: RSP_0546
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
RSP_0546
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
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