Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Bradyrhizobium japonicum USDA 110

Properties
Regulator type: Transcription factor
TF locus tag: blr2037
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhizobiales
Statistics of regulated genes:
- Genes 26
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 130 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -39
Score: 3.8
Sequence: TGTCATCTCGTCAACA
Locus tag: blr2037
Name: nifA
Funciton: Nitrogen fixation transcriptional regulator NifA, Fis family
blr2037
nifA
Nitrogen fixation transcriptional regulator NifA, Fis family
Position: -194
Score: 3.9
Sequence: TGTCATTTTCACGACA
Locus tag: bll2060
Name: groES3
Funciton: Heat shock protein 60 family co-chaperone GroES
Locus tag: bll2059
Name: groEL
Funciton: Heat shock protein 60 family chaperone GroEL
bll2060
groES3
Heat shock protein 60 family co-chaperone GroES
bll2059
groEL
Heat shock protein 60 family chaperone GroEL
Position: -155
Score: 5.1
Sequence: TGTCGGATTCGCAACA
Locus tag: blr1743
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: blr1744
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: blr1745
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: blr1746
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: blr1747
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: blr1748
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: bsr1749
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: bsr1750
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
blr1743
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
blr1744
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
blr1745
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
blr1746
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
blr1747
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
blr1748
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
bsr1749
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
bsr1750
fdxB
Nitrogenase specific ferredoxin III protein FdxB
Position: -116
Score: 5.2
Sequence: TGTCAGGAACCCGACA
Locus tag: blr1755
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
blr1755
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
Position: -495
Score: 4.3
Sequence: TGTCGCATTTGCCACG
Locus tag: blr1771
Name: nifW
Funciton: Nitrogenase stabilizing/protective protein NifW
blr1771
nifW
Nitrogenase stabilizing/protective protein NifW
Position: -265
Score: 4
Sequence: TATGGCGATGCCGACA
Locus tag: blr2144
Name: cpxP
Funciton: Cytochrome P450 protein CpxP
Locus tag: blr2145
Name: cpxR
Funciton: Putative cytochrome P450 hydroxylase
blr2144
cpxP
Cytochrome P450 protein CpxP
blr2145
cpxR
Putative cytochrome P450 hydroxylase
Position: -129
Score: 4.3
Sequence: TGTCGGCATTGAGACT
Position: -110
Score: 4.2
Sequence: TGCCAGAAACCTGACA
Locus tag: blr2143
Name: cpx1
Funciton: Cytochrome P450-family protein
blr2143
cpx1
Cytochrome P450-family protein
Position: -186
Score: 3.8
Sequence: CGTCGAAAACTGGACA
Position: -34
Score: 3.8
Sequence: CGTAACGCTGGCGACA
Locus tag: blr1720
Name: hupS
Funciton: Uptake hydrogenase small subunit precursor (EC 1.12.99.6)
Locus tag: blr1721
Name: hupL
Funciton: Uptake hydrogenase large subunit (EC 1.12.99.6)
Locus tag: blr1722
Name: hupC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
blr1720
hupS
Uptake hydrogenase small subunit precursor (EC 1.12.99.6)
blr1721
hupL
Uptake hydrogenase large subunit (EC 1.12.99.6)
blr1722
hupC
Ni,Fe-hydrogenase I cytochrome b subunit
Position: -376
Score: 4.2
Sequence: TGTCTGAGTGGCGGCA
Locus tag: blr1883
Name: rpoN
Funciton: RNA polymerase sigma-54 factor RpoN
blr1883
rpoN
RNA polymerase sigma-54 factor RpoN
Position: -257
Score: 3.6
Sequence: TTTCGAGCTCGCTACA
Locus tag: bll1075
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
bll1075
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
Position: -126
Score: 3.9
Sequence: TGTCTTGAATGCGCCA
Position: -106
Score: 3.8
Sequence: TTCCGCGTGCGCGACA
Locus tag: blr2036
Name: fixR
Funciton: Oxidoreductase, short chain dehydrogenase/reductase family
blr2036
fixR
Oxidoreductase, short chain dehydrogenase/reductase family
Position: -215
Score: 4.5
Sequence: TGTCAGCTTGCCGACC
Position: -195
Score: 5.6
Sequence: TGTCGGAAATCCGACA
Locus tag: blr6951
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1)
Locus tag: blr6952
Name: modB
Funciton: Molybdate ABC transporter, permease protein
Locus tag: blr6953
Name: modC
Funciton: Molybdate ABC transporter, ATP-binding protein
blr6951
modA
Molybdenum ABC transporter, substrate-binding protein ModA (TC 3.A.1.8.1)
blr6952
modB
Molybdate ABC transporter, permease protein
blr6953
modC
Molybdate ABC transporter, ATP-binding protein
Position: -369
Score: 4
Sequence: TGTCCGCTTGGAAACA
Position: -349
Score: 4.2
Sequence: TGCCAGAAACCTGACA
Locus tag: blr1719
Name: modB
Funciton: Molybdate ABC transporter, permease protein
blr1719
modB
Molybdate ABC transporter, permease protein
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