Regulon of MetJ in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_4042
Regulator family:	MetJ
Regulation mode:	repressor
Biological process:	Methionine biosynthesis; Methionine metabolism
Effector:	S-adenosylmethionine
Regulog:	MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes	15
- Operons	13
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 397 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - MetJ
By TF family - MetJ
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis
By pathway - Methionine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -199 Score: 5.6 Sequence: AGAAGTAA-(0)-AAACATCT Position: -191 Score: 7.1 Sequence: AAACATCT-(0)-AGACGTCT Position: -167 Score: 6.3 Sequence: AGACGTCT-(0)-ATAAATCT Locus tag: Ssed_3934 Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family
	Ssed_3934	metT	Methionine transporter MetT, NhaC antiporter family
Position: -125 Score: 6 Sequence: GGACGTCT-(0)-AAATGGCT Position: -71 Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT Locus tag: Ssed_4041 Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: Ssed_4040 Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
	Ssed_4041	metB	Cystathionine gamma-synthase (EC 2.5.1.48)
	Ssed_4040	metL	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -48 Score: 5.7 Sequence: GGACATGT-(0)-AGACATCC Position: -40 Score: 6.7 Sequence: AGACATCC-(0)-AGAAGTCT Position: -32 Score: 5.6 Sequence: AGAAGTCT-(0)-TGATGTAT Locus tag: Ssed_1471 Name: COG3126 Funciton: Lipoprotein-related protein Locus tag: Ssed_1472 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	Ssed_1471	COG3126	Lipoprotein-related protein
	Ssed_1472	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -61 Score: 5.4 Sequence: GGCCGTCT-(0)-AGATGTAG Position: -53 Score: 5.2 Sequence: AGATGTAG-(0)-ATACTTCT Locus tag: Ssed_0873 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	Ssed_0873	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -69 Score: 5.9 Sequence: AAATATTT-(0)-AGACTTCT Position: -61 Score: 7 Sequence: AGACTTCT-(0)-AGACGTCC Locus tag: Ssed_3283 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	Ssed_3283	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -116 Score: 5 Sequence: ACACATTT-(0)-GGGCGTCT Position: -108 Score: 6.3 Sequence: GGGCGTCT-(0)-GGACGTCT Position: -100 Score: 6.4 Sequence: GGACGTCT-(0)-AGAAGTTT Locus tag: Ssed_3556 Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
	Ssed_3556	metR	Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Position: -54 Score: 6.7 Sequence: AGACGTCT-(0)-ATACGTAT Position: -46 Score: 6.1 Sequence: ATACGTAT-(0)-AAACATCT Locus tag: Ssed_3739 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	Ssed_3739	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -71 Score: 6.3 Sequence: GGATGTAT-(0)-AGACGTCC Position: -63 Score: 7.1 Sequence: AGACGTCC-(0)-AAACGTCT Locus tag: Ssed_4039 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
	Ssed_4039	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -178 Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT Position: -170 Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC Position: -124 Score: 6.3 Sequence: AGCCATTT-(0)-AGACGTCC Position: -116 Score: 6.4 Sequence: AGACGTCC-(0)-AAACATAT Position: -108 Score: 6 Sequence: AAACATAT-(0)-AGAAATCT Locus tag: Ssed_4042 Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
	Ssed_4042	metJ	S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -79 Score: 6.7 Sequence: AGACATCT-(0)-AGCCGTCC Position: -71 Score: 6.3 Sequence: AGCCGTCC-(0)-AGACGTTC Locus tag: Ssed_2331 Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
	Ssed_2331	msrA	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -452 Score: 6 Sequence: AGACATTT-(0)-ATACGTAT Position: -444 Score: 6.7 Sequence: ATACGTAT-(0)-AGACGTCT Locus tag: Ssed_3559 Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12
	Ssed_3559	btuB	TonB-dependent outer membrane transporter for vitamin B12
Position: -129 Score: 6.6 Sequence: AAACTTCT-(0)-AGACGTCC Position: -121 Score: 6.5 Sequence: AGACGTCC-(0)-AGACGCCC Locus tag: Ssed_3555 Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
	Ssed_3555	metE	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -10 Score: 5.4 Sequence: AGCCGTTT-(0)-AGATGTTA Position: -2 Score: 5.3 Sequence: AGATGTTA-(0)-AGATGGCT Locus tag: Ssed_2496 Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
	Ssed_2496	metC	Cystathionine beta-lyase (EC 4.4.1.8)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of MetJ in Shewanella sediminis HAW-EB3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --