Regulog NikR - Rhodospirillales

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhodospirillales
By trascription factor - NikR
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Rhodospirillum rubrum ATCC 11170
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Azospirillum sp. B510	6	2
Rhodospirillum centenum SW
Gluconacetobacter diazotrophicus PAl 5
Acetobacter pasteurianus IFO 3283-01
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
nikR	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	* Azospirillum sp. B510 Site: position = -73 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: AZL_008760: Nickel-responsive repressor NikR, CopG family	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel-responsive repressor NikR, CopG family

CRON 2.
nikA	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2277: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	* Azospirillum sp. B510 Site: position = -126 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: AZL_008770: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
nikB	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2276: Nickel transport system permease protein NikB (TC 3.A.1.5.3)	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_008780: Nickel transport system permease protein NikB (TC 3.A.1.5.3)	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel transport system permease protein NikB (TC 3.A.1.5.3)
nikC	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2275: Nickel transport system permease protein NikC (TC 3.A.1.5.3)	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_008790: Nickel transport system permease protein NikC (TC 3.A.1.5.3)	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel transport system permease protein NikC (TC 3.A.1.5.3)
nikD	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2274: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_008800: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
nikE	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2273: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_008810: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --