Regulog NrdR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396	4	2
Marinobacter aqueolei	4	2
Marinobacter sp. ELB17	4	2
Oceanobacter sp. RED65	3	1
Oceanospirillum sp. MED92	3	1
Marinomonas sp. MWYL1	3	1
Saccharophagus degradans 2-40	3	2
Teredinibacter turnerae T7901	4	2
Cellvibrio japonicus Ueda107	2	1
Chromohalobacter salexigens DSM 3043	2	1
Reinekea sp. MED297	4	2
Alcanivorax borkumensis SK2	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
nrdJa	* Hahella chejuensis KCTC 2396 Site: position = -160 score = 4.96013 sequence = GCACAACATATTGTGG Site: position = -330 score = 4.59255 sequence = TCGCCATATATAGGGT Gene: HCH_04895: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Marinobacter aqueolei Site: position = -118 score = 5.43132 sequence = ACACCATATATAGTGA Site: position = -284 score = 4.58587 sequence = ACACTATATCCTGTTA Site: position = -252 score = 4.68173 sequence = AGCCCATATATAGGGT Gene: Maqu_1085: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	* Marinobacter sp. ELB17 Site: position = -175 score = 3.36164 sequence = GACCTATATGTAGGAC Site: position = -207 score = 4.5158 sequence = ACACTACATCCTGTTA Gene: MELB17_11133: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	* Teredinibacter turnerae T7901 Site: position = -22 score = 5.17513 sequence = ACACCATATATTGGGG Gene: TERTU_1637: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -165 score = 4.76753 sequence = CCACTACAGGTTGTGT Site: position = -133 score = 4.51736 sequence = ACACTACAGGTAGTGC Gene: MED297_14097: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Alcanivorax borkumensis SK2	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
nrdJb	Hahella chejuensis KCTC 2396 Gene: HCH_04896: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Marinobacter aqueolei Gene: Maqu_1084: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Marinobacter sp. ELB17 Gene: MELB17_11128: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901 Gene: TERTU_1636: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297 Gene: MED297_14092: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)	Alcanivorax borkumensis SK2	Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1)

CRON 2.
nrdA	* Hahella chejuensis KCTC 2396 Site: position = -353 score = 4.62874 sequence = AAACCATATATTGTGC Site: position = -385 score = 4.44349 sequence = ACGCTACATCTAGTAT Gene: HCH_06929: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Marinobacter aqueolei Site: position = -280 score = 3.7129 sequence = CGGCCCTATATAGTGA Site: position = -248 score = 4.91571 sequence = CTACCATATATTGTGA Gene: Maqu_3857: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Marinobacter sp. ELB17 Site: position = -383 score = 4.17024 sequence = ATACCAGATGTAGTGA Site: position = -415 score = 3.9672 sequence = TTCCCGTATATAGTGT Gene: MELB17_00905: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Oceanobacter sp. RED65 Site: position = -170 score = 4.58808 sequence = ACCCATTATCTTGTGT Site: position = -202 score = 5.15662 sequence = ACACTATATATGGGGT Gene: RED65_10534: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Oceanospirillum sp. MED92 Site: position = -190 score = 4.91869 sequence = TCACTATATTTAGTGT Site: position = -159 score = 4.87923 sequence = GTACTACATATAGTGT Gene: MED92_15538: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Marinomonas sp. MWYL1 Site: position = -87 score = 5.56938 sequence = ACACTACATATAGTGT Site: position = -55 score = 4.63804 sequence = ACACTACATACAGTAA Gene: Mmwyl1_2996: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Saccharophagus degradans 2-40 Site: position = -188 score = 5.42675 sequence = CCACTATATATAGTGG Site: position = -451 score = 3.72806 sequence = CCGCATTATCTTGTAT Site: position = -420 score = 4.97112 sequence = CCCCCATATATGGTGT Gene: Sde_2458: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Teredinibacter turnerae T7901 Site: position = -292 score = 3.72806 sequence = CCGCATTATCTTGTAT Site: position = -261 score = 4.93832 sequence = CCCCAATATATGGTGT Gene: TERTU_0730: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Cellvibrio japonicus Ueda107 Site: position = -255 score = 5.2488 sequence = CCACTATATCTAGTGG Site: position = -456 score = 4.19034 sequence = CCCCTAGATATAGGTT Site: position = -487 score = 3.60027 sequence = CCGCATTATCTTGTAG Gene: CJA_1569: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Chromohalobacter salexigens DSM 3043 Site: position = -206 score = 3.33192 sequence = CGGCTCTATCTTGTGC Site: position = -175 score = 4.98825 sequence = CCCCCATATATAGGGA Gene: Csal_0668: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Reinekea sp. MED297 Site: position = -366 score = 4.86549 sequence = GCCCTATATGTTGTGT Site: position = -397 score = 4.7928 sequence = ACACAATATATGGTTT Gene: MED297_18987: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Alcanivorax borkumensis SK2 Site: position = -442 score = 5.4615 sequence = ACACTATATCTAGTGT Site: position = -164 score = 5.07965 sequence = ACACAACATCTTGTGG Site: position = -297 score = 4.67672 sequence = CCCCAACATGTTGGGT Gene: ABO_0711: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	Hahella chejuensis KCTC 2396 Gene: HCH_06928: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Marinobacter aqueolei Gene: Maqu_3856: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Marinobacter sp. ELB17 Gene: MELB17_00910: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Oceanobacter sp. RED65 Gene: RED65_10539: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Oceanospirillum sp. MED92 Gene: MED92_15533: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Marinomonas sp. MWYL1 Gene: Mmwyl1_2997: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	2 Saccharophagus degradans 2-40* Site: position = -63 score = 4.76751 sequence = CACCTATATATAGTGG Site: position = -32 score = 4.38668 sequence = CAACCACATATAGTTA Gene: Sde_3460: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) Gene: Sde_2459: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Teredinibacter turnerae T7901 Gene: TERTU_0729: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Cellvibrio japonicus Ueda107 Gene: CJA_1568: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Chromohalobacter salexigens DSM 3043 Gene: Csal_0667: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Reinekea sp. MED297 Gene: MED297_18982: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Alcanivorax borkumensis SK2 Gene: ABO_0710: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65 Gene: RED65_10544: Ferredoxin	Oceanospirillum sp. MED92 Gene: MED92_15528: Ferredoxin	Marinomonas sp. MWYL1 Gene: Mmwyl1_2998: Ferredoxin	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Ferredoxin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --