Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing COG3272 gene

Properties
Regulog: PhrR - Vibrionales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Heat shock; Adenosylcobalamin
Phylum: Proteobacteria/Gamma
Built upon 16 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Vibrio angustum S14
Position: -87
Score: 6.15881
Sequence: TATACAATAAAAAAACTTGTACA
Locus tag: VAS14_11844
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VAS14_11849
Name: VAS14_11849
Funciton: hypothetical protein
Locus tag: VAS14_11854
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VAS14_11859
Name: metY
Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Locus tag: VAS14_11864
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VAS14_11869
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VAS14_11874
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: VAS14_11879
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: VAS14_11884
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: VAS14_11889
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: VAS14_11894
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: VAS14_11899
Name: PF11086
Funciton: Protein of unknown function DUF2878
COG3272-VAS14_11849-COG3272-metY-phrR-phr-PF07366-PF00106-PF01593-PF07103-PF02353-PF11086 -87 6.2 TATACAATAAAAAAACTTGTACA VAS14_11844
Vibrio cholerae O1 biovar eltor str. N16961
Position: -76
Score: 6.74493
Sequence: TGTACAAAAAAAATATTTGTACA
Position: -28
Score: 5.76117
Sequence: TGTACAGAAATTTTCATTGTATA
Locus tag: VCA0055
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VCA0056
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VCA0057
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VCA0058
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD -76 6.7 TGTACAAAAAAAATATTTGTACA VCA0055
-28 5.8 TGTACAGAAATTTTCATTGTATA
Vibrio harveyi ATCC BAA-1116
Position: -81
Score: 6.02085
Sequence: TGTACATTTTATTTTCTTGTACA
Position: -35
Score: 6.10088
Sequence: TATACAACAAAACATTTTGTATA
Locus tag: VIBHAR_05120
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VIBHAR_05121
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VIBHAR_05122
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VIBHAR_05123
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD -81 6 TGTACATTTTATTTTCTTGTACA VIBHAR_05120
-35 6.1 TATACAACAAAACATTTTGTATA
Vibrio parahaemolyticus RIMD 2210633
Position: -83
Score: 6.4178
Sequence: TGTACAACTAATTTTCTTGTACA
Position: -37
Score: 6.20311
Sequence: TATACAACTAAACTTTTTGTATA
Locus tag: VPA1473
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VPA1472
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VPA1471
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VPA1470
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD -83 6.4 TGTACAACTAATTTTCTTGTACA VPA1473
-37 6.2 TATACAACTAAACTTTTTGTATA
Vibrio shilonii AK1
Position: -78
Score: 5.61234
Sequence: TGTACAAGATAGAATTTTGTATC
Locus tag: VSAK1_17997
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VSAK1_17992
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VSAK1_17987
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VSAK1_17982
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD -78 5.6 TGTACAAGATAGAATTTTGTATC VSAK1_17997
Vibrio vulnificus CMCP6
Position: -81
Score: 6.74493
Sequence: TGTACAAAAAAAATATTTGTACA
Position: -35
Score: 6.67285
Sequence: TGTACAAGTAATTTTTTTGTACA
Locus tag: VV21541
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VV21542
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VV21543
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VV21544
Name: ykuD
Funciton: L,D-transpeptidase catalytic domain
COG3272-phrR-phr-ykuD -81 6.7 TGTACAAAAAAAATATTTGTACA VV21541
-35 6.7 TGTACAAGTAATTTTTTTGTACA
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