Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing trmU gene

Properties
Regulog: IscR - Clostridia-2
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron-sulfur cluster biogenesis
Effector: Iron-sulfur cluster redox state
Phylum: Firmicutes
Built upon 7 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium bartlettii DSM 16795
Position: -113
Score: 6.62147
Sequence: TTAATTCTGACTAAAATAGTCAAAATTAA
Position: -88
Score: 5.73843
Sequence: TTAATGTTGACAAAAACACTCAAGTATAA
Locus tag: CLOBAR_02189
Name: iscR
Funciton: Iron-sulfur cluster assembly transcription factor IscR
Locus tag: CLOBAR_02188
Name: iscS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: CLOBAR_02187
Name: iscU
Funciton: Iron-sulfur cluster assembly scaffold protein IscU/NifU-like
Locus tag: CLOBAR_02186
Name: trmU
Funciton: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)
iscR-iscS-iscU-trmU -113 6.6 TTAATTCTGACTAAAATAGTCAAAATTAA CLOBAR_02189
-88 5.7 TTAATGTTGACAAAAACACTCAAGTATAA
Clostridium hiranonis DSM 13275
Position: -103
Score: 5.88657
Sequence: ACAAATCATACTAAAATAGTAGGAAATAA
Position: -77
Score: 5.65314
Sequence: TAATACTTGACAAAAATAGTCGGATATAA
Position: -43
Score: 6.01591
Sequence: TTAAACCATAGTAAAACAGTAGGAATTAA
Locus tag: CLOHIR_01195
Name: iscR
Funciton: Iron-sulfur cluster assembly transcription factor IscR
Locus tag: CLOHIR_01196
Name: iscS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: CLOHIR_01197
Name: iscU
Funciton: Iron-sulfur cluster assembly scaffold protein IscU/NifU-like
Locus tag: CLOHIR_01198
Name: trmU
Funciton: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)
iscR-iscS-iscU-trmU -103 5.9 ACAAATCATACTAAAATAGTAGGAAATAA CLOHIR_01195
-77 5.7 TAATACTTGACAAAAATAGTCGGATATAA
-43 6 TTAAACCATAGTAAAACAGTAGGAATTAA